CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0469200

Gene name
Homology with Arabidopsis Similar to At4g29260: acid phosphatase class B family protein (HF=9e-1)

Module size 6 genes

NF 0.62

%ile 84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.99 Os04g0469200 9632.m03729 - Heavy metal transport/detoxification proteindomain containing protein 9e-1 At4g29260 acid phosphatase class B family protein O.I. H.G. S.X.
0.73 91.1 0.99 Os12g0211400 9640.m01026 - HhH-GPD family protein 7e-1 At4g17310 unknown protein O.I. H.G. S.X.
0.60 79.7 0.99 Os07g0453000 NM_187150.1 - Conserved hypothetical protein 2e+0 At1g50460 HKL1 (HEXOKINASE-LIKE 1) O.I. H.G. S.X.
0.56 76.3 0.99 Os03g0612800 9631.m04004 - - 1e+0 At3g29305 unknown protein O.I. H.G. S.X.
0.55 73.7 0.99 Os11g0671700 9639.m04167 - - 1e-1 At3g13830 F-box family protein O.I. H.G. S.X.
0.47 62.3 0.99 Os02g0546050 9630.m03255 - - 1e+1 At4g28750 PSAE-1 (PSA E1 KNOCKOUT) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
66.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.8 99.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g29260, orthologous to the query gene, Os04g0469200

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g29260 829047 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:plasma membrane, vacuole;PBOM O.I. H.G. S.X.
0.46 59.8 At4g28770 828998 - F:molecular_function unknown;P:unknown;C:plasma membrane, vacuole, membrane;PO O.I. H.G. S.X.
0.36 43.6 At5g20650 832188 COPT5 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast O.I. H.G. S.X.
0.30 32.1 At2g19340 816451 membrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPO O.I. H.G. S.X.
0.24 20.7 At3g11530 820326 vacuolar protein sorting 55 family protein / VPS55 family protein F:transporter activity;P:transport;C:vacuole;FMPO O.I. H.G. S.X.
0.22 17.5 At4g02080 827368 ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. O.I. H.G. S.X.
0.22 17.5 At4g32530 829388 vacuolar ATP synthase, putative / V-ATPase, putative F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MFOPBA O.I. H.G. S.X.
0.20 14.4 At4g38920 830047 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MOFBPA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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