CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0469000

Gene name
Homology with Arabidopsis Similar to At3g52350: D111/G-patch domain-containing protein (HF=1e+0)

Module size 7 genes

NF 0.03

%ile 1.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.76 Os04g0469000 AK062816.1 - Heavy metal transport/detoxification proteindomain containing protein 1e+0 At3g52350 D111/G-patch domain-containing protein O.I. H.G. S.X.
0.14 9.3 0.81 Os05g0531000 AK120442.1 - Conserved hypothetical protein 9e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) O.I. H.G. S.X.
0.10 5.7 0.82 Os02g0518000 AK068281.1 - C2 calcium/lipid-binding region, CaLB domaincontaining protein 2e-1 At2g01080 - O.I. H.G. S.X.
0.04 2.0 0.83 Os06g0354700 AK068937.1 - Alpha/beta hydrolase fold domain containingprotein 5e-3 At5g13800 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.03 1.4 0.80 Os01g0925700 AU056525 - Protein kinase domain containing protein 7e-2 At1g54610 protein kinase family protein O.I. H.G. S.X.
0.01 0.5 0.82 Os02g0792800 AK105616.1 - Rieske iron-sulfur protein Tic55 precursor 2e-1 At5g23970 transferase family protein O.I. H.G. S.X.
0.01 0.5 0.79 Os05g0507300 AK060834.1 - Calreticulin 3 precursor 7e-23 At1g08450 CRT3 (CALRETICULIN 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.0 99.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
15.5 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0051208 The process of binding or confining calcium ions such that they are separated from other components of a biological system.
0.028 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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