Co-expression analysis

Gene ID Os04g0462400
Gene name
Homology with ArabidopsisSimilar to At1g25530: lysine and histidine specific transporter, putative (HF=1e-5)
Module size 7 genes
NF 0.48
%ile 62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.83Os04g04624009632.m03670-Lysine and histidine specific transporter1e-5At1g25530lysine and histidine specific transporter, putativeO.I.H.G.S.X.
0.5777.00.87Os04g0610900AK120898.1-EDR19e-5At4g24480serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.5573.70.89Os04g0588700AK099941.1-ABC transporter, transmembrane region domaincontaining protein9e-6At3g59140ATMRP14O.I.H.G.S.X.
0.4458.10.88Os12g0490000CA762266-Mitochodrial transcription terminationfactor-related family protein5e+0At4g08170inositol 1,3,4-trisphosphate 5/6-kinase family proteinO.I.H.G.S.X.
0.3846.90.87Os04g0565900AK109094.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein2e-1At1g61660basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3541.70.89Os12g0454800AY572461.1-Histidine kinase7e-3At5g10530lectin protein kinase, putativeO.I.H.G.S.X.
0.3338.80.88Os02g0579600AY177696.1-Transcription factor MADS277e-19At3g57230AGL16 (AGAMOUS-LIKE 16)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.499.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
18.398.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.598.1GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.598.1GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.498.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1671GO:0006779The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.Link to AmiGO
0.0131GO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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