CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0461300

Gene name
Homology with Arabidopsis Similar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=3e-7)

Module size 6 genes

NF 0.23

%ile 21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.97 Os04g0461300 9632.m03661 - MADS-box transcription factor MADS2 3e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.22 19.4 0.98 Os09g0107400 9637.m00042 - - 2e+0 At3g03460 unknown protein O.I. H.G. S.X.
0.22 19.4 0.98 Os07g0248401 9635.m01434 - - 3e+0 At1g70400 - O.I. H.G. S.X.
0.22 19.4 0.98 Os02g0196200 9630.m00943 - - 5e-1 At4g25490 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) O.I. H.G. S.X.
0.13 8.2 0.98 Os10g0168600 NM_195037.1 - - 6e-1 At2g14835 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.13 8.2 0.98 Os06g0542800 9634.m03318 - - 8e-3 At4g34560 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.7	0.94	Os01g0945100	NM_189752.1	-	Amino acid/polyamine transporter I family protein	5e-5	At2g01170	BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1)	O.I.	H.G.	S.X.
0.36	44.0	0.97	Os04g0112100	9632.m00117	-	Disease resistance protein family protein	3e+0	At1g09815	POLD4 (POLYMERASE DELTA 4)	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os01g0798800	AK064257.1	-	-	1e-3	At5g45470	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os05g0103300	AK071540.1	-	AT.I.24-5 protein (Fragment)	9e-2	At5g63500	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os06g0315300	9634.m02054	-	-	4e-8	At1g15125	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	O.I.	H.G.	S.X.
0.35	41.7	0.97	Os10g0426500	9638.m02478	-	MATH domain containing protein	5e-1	At3g19580	AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os02g0570000	9630.m03444	-	-	1e-1	At1g62420	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os03g0133000	AK107090.1	-	No apical meristem (NAM) protein domain containingprotein	4e-3	At2g17040	anac036 (Arabidopsis NAC domain containing protein 36)	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os01g0536950	9629.m03321	-	-	5e+0	At3g12830	auxin-responsive family protein	O.I.	H.G.	S.X.
0.32	36.3	0.98	Os03g0567500	9631.m03544	-	-	1e+1	At5g28050	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os02g0451400	9630.m02380	-	-	5e-2	At3g46380	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os03g0403900	9631.m02829	-	-	7e-1	At2g01300	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os01g0977400	AK101308.1	-	TPR-like domain containing protein	2e-2	At4g18570	proline-rich family protein	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os11g0467600	9639.m02515	-	-	2e+0	At5g23230	NIC2 (NICOTINAMIDASE 2)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
62.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.6 99.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
17.7 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
14.9 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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