Co-expression analysis

Gene ID Os04g0461300
Gene name
Homology with ArabidopsisSimilar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=3e-7)
Module size 6 genes
NF 0.23
%ile 21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.80.97Os04g04613009632.m03661-MADS-box transcription factor MADS23e-7At3g57230AGL16 (AGAMOUS-LIKE 16)O.I.H.G.S.X.
0.2219.40.98Os09g01074009637.m00042--2e+0At3g03460unknown proteinO.I.H.G.S.X.
0.2219.40.98Os07g02484019635.m01434--3e+0At1g70400-O.I.H.G.S.X.
0.2219.40.98Os02g01962009630.m00943--5e-1At4g25490CBF1 (C-REPEAT/DRE BINDING FACTOR 1)O.I.H.G.S.X.
0.138.20.98Os10g0168600NM_195037.1--6e-1At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.138.20.98Os06g05428009634.m03318--8e-3At4g34560unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
62.499.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
22.699.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.999.0GSM195222Ovary 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
17.798.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.898.7GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.798.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.398.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.298.7GSM195221Ovary 1, biological rep 1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
14.998.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.898.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1618509_at, orthologous to the query gene, Os04g0461300

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81618509_atAt3g57230flowering-related B-class MADS-box protein APETALA3-4e-11At3g54340AP3 (APETALA 3)O.I.H.G.S.X.
0.2022.41611738_atAt3g57230hypothetical protein LOC100259968-8e-39At5g142003-isopropylmalate dehydrogenase, chloroplast, putativeO.I.H.G.S.X.
0.1313.31620677_atAt3g57230hypothetical protein LOC100257709-1e+0At4g20440smB (small nuclear ribonucleoprotein associated protein B)O.I.H.G.S.X.
0.1111.31617195_s_atAt3g57230hypothetical protein LOC100262509-1e-26At1g0959060S ribosomal protein L21 (RPL21A)O.I.H.G.S.X.
0.1010.31614915_atAt3g57230hypothetical protein LOC100265632-2e-15At3g20780ATTOP6B (topoisomerase 6 subunit B)O.I.H.G.S.X.
0.056.01622877_atAt3g57230hypothetical protein LOC100244334-2e+0At1g70400-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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