CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0461300

Gene name
Homology with Arabidopsis Similar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=3e-7)

Module size 6 genes

NF 0.23

%ile 21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.97 Os04g0461300 9632.m03661 - MADS-box transcription factor MADS2 3e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.22 19.4 0.98 Os09g0107400 9637.m00042 - - 2e+0 At3g03460 unknown protein O.I. H.G. S.X.
0.22 19.4 0.98 Os07g0248401 9635.m01434 - - 3e+0 At1g70400 - O.I. H.G. S.X.
0.22 19.4 0.98 Os02g0196200 9630.m00943 - - 5e-1 At4g25490 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) O.I. H.G. S.X.
0.13 8.2 0.98 Os10g0168600 NM_195037.1 - - 6e-1 At2g14835 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.13 8.2 0.98 Os06g0542800 9634.m03318 - - 8e-3 At4g34560 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
62.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.6 99.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
17.7 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
14.9 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.27569.1.A1_at, orthologous to the query gene, Os04g0461300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 Ta.27569.1.A1_at At3g57230 MADS-box transcription factor TaAGL35 - 8e-2 At5g51870 AGL71 (AGAMOUS-LIKE 71) O.I. H.G. S.X.
0.63 83.1 Ta.23282.2.A1_at At3g57230 - - 4e-1 At5g12940 leucine-rich repeat family protein O.I. H.G. S.X.
0.56 78.6 Ta.6567.2.S1_at At3g57230 - - 4e+0 At4g00850 GIF3 (GRF1-INTERACTING FACTOR 3) O.I. H.G. S.X.
0.56 78.6 Ta.7168.3.S1_at At3g57230 - - 6e-34 At4g30600 signal recognition particle receptor alpha subunit family protein O.I. H.G. S.X.
0.55 76.8 Ta.10014.2.S1_at At3g57230 - - 7e+0 At1g77290 tetrachloro-p-hydroquinone reductive dehalogenase-related O.I. H.G. S.X.
0.48 69.0 TaAffx.5994.1.S1_at At3g57230 - - 1e+1 At5g41400 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.48 69.0 Ta.9465.2.A1_at At3g57230 - - 1e-3 At2g40110 yippee family protein O.I. H.G. S.X.
0.46 66.8 Ta.21296.2.S1_at At3g57230 - - 2e+0 At4g09260 unknown protein O.I. H.G. S.X.
0.46 66.8 TaAffx.17257.3.A1_at At3g57230 - - 4e+0 At4g08730 unknown protein O.I. H.G. S.X.
0.35 49.8 Ta.10537.1.A1_at At3g57230 - - 4e-3 At5g60990 DEAD/DEAH box helicase, putative (RH10) O.I. H.G. S.X.
0.35 49.8 Ta.2490.3.S1_at At3g57230 - - 1e-27 At2g44180 MAP2A (METHIONINE AMINOPEPTIDASE 2A) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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