Co-expression analysis

Gene ID	Os04g0461300
Gene name
Homology with Arabidopsis	Similar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=3e-7)
Module size	6 genes
NF	0.23
%ile	21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.8	0.97	Os04g0461300	9632.m03661	-	MADS-box transcription factor MADS2	3e-7	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	0.98	Os09g0107400	9637.m00042	-	-	2e+0	At3g03460	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	0.98	Os07g0248401	9635.m01434	-	-	3e+0	At1g70400	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	0.98	Os02g0196200	9630.m00943	-	-	5e-1	At4g25490	CBF1 (C-REPEAT/DRE BINDING FACTOR 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	0.98	Os10g0168600	NM_195037.1	-	-	6e-1	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	0.98	Os06g0542800	9634.m03318	-	-	8e-3	At4g34560	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
62.4	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.6	99.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9	99.0	GSM195222	Ovary 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
17.7	98.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8	98.7	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2	98.7	GSM195221	Ovary 1, biological rep 1	GSE7951	Genome-wide gene expression profiling of rice stigma
14.9	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8	98.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.71421.1.S1_at, orthologous to the query gene, Os04g0461300

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	78.8	GmaAffx.71421.1.S1_at	At3g57230	-	-	4e-21	At2g14210	AGL44 (AGAMOUS-LIKE 44)	O.I.	H.G.	S.X.	Please select
0.56	78.2	Gma.6645.1.S1_at	At3g57230	-	-	1e-1	At1g59865	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	GmaAffx.15816.1.A1_at	At3g57230	-	-	4e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.53	74.2	GmaAffx.58795.1.S1_at	At3g57230	-	-	6e-9	At4g33790	CER4 (ECERIFERUM 4)	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.5273.1.S1_s_at	At3g57230	-	-	3e+0	At5g49600	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.87086.1.S1_at	At3g57230	-	-	2e-1	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.6156.1.S1_at	At3g57230	WRKY64 protein	-	2e-9	At5g41570	WRKY24	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.16632.1.S1_at	At3g57230	-	-	1e-1	At1g21340	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.9783.1.S1_at	At3g57230	-	-	3e-6	At2g23540	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.85946.1.S1_at	At3g57230	-	-	2e-1	At4g33610	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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