CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0461300

Gene name
Homology with Arabidopsis Similar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=3e-7)

Module size 6 genes

NF 0.23

%ile 21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.97 Os04g0461300 9632.m03661 - MADS-box transcription factor MADS2 3e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.22 19.4 0.98 Os09g0107400 9637.m00042 - - 2e+0 At3g03460 unknown protein O.I. H.G. S.X.
0.22 19.4 0.98 Os07g0248401 9635.m01434 - - 3e+0 At1g70400 - O.I. H.G. S.X.
0.22 19.4 0.98 Os02g0196200 9630.m00943 - - 5e-1 At4g25490 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) O.I. H.G. S.X.
0.13 8.2 0.98 Os10g0168600 NM_195037.1 - - 6e-1 At2g14835 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.13 8.2 0.98 Os06g0542800 9634.m03318 - - 8e-3 At4g34560 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.97	Os04g0461300	9632.m03661	-	MADS-box transcription factor MADS2	3e-7	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.
0.22	19.4	0.98	Os09g0107400	9637.m00042	-	-	2e+0	At3g03460	unknown protein	O.I.	H.G.	S.X.
0.22	19.4	0.98	Os07g0248401	9635.m01434	-	-	3e+0	At1g70400	-	O.I.	H.G.	S.X.
0.22	19.4	0.98	Os02g0196200	9630.m00943	-	-	5e-1	At4g25490	CBF1 (C-REPEAT/DRE BINDING FACTOR 1)	O.I.	H.G.	S.X.
0.13	8.2	0.98	Os10g0168600	NM_195037.1	-	-	6e-1	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.13	8.2	0.98	Os06g0542800	9634.m03318	-	-	8e-3	At4g34560	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
62.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.6 99.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
17.7 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
14.9 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
62.4	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.6	99.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9	99.0	GSM195222	Ovary 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
17.7	98.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8	98.7	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2	98.7	GSM195221	Ovary 1, biological rep 1	GSE7951	Genome-wide gene expression profiling of rice stigma
14.9	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8	98.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g57230, orthologous to the query gene, Os04g0461300

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g57230 824890 AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. O.I. H.G. S.X.
0.52 67.4 At1g34120 840311 IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I) Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2. O.I. H.G. S.X.
0.46 59.8 At5g10790 830946 UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) Encodes a ubiquitin-specific protease. O.I. H.G. S.X.
0.45 58.3 At2g01980 814729 SOS1 (SALT OVERLY SENSITIVE 1) Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. O.I. H.G. S.X.
0.44 57.2 At1g47310 841134 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.42 53.9 At5g05700 830454 ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1) Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence. O.I. H.G. S.X.
0.42 53.9 At1g49710 841394 FUT12 (FUCOSYLTRANSFERASE 12) Encodes a protein with core α1,3-fucosyltransferase activity. O.I. H.G. S.X.
0.42 53.9 At5g23520 832417 - F:unknown;P:unknown;C:cytoplasm;FPMBO O.I. H.G. S.X.
0.41 52.4 At5g61580 836279 PFK4 (PHOSPHOFRUCTOKINASE 4) F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAV O.I. H.G. S.X.
0.41 52.4 At5g43100 834326 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPFO O.I. H.G. S.X.
0.40 50.8 At2g04620 815004 cation efflux family protein F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;OBMFPAV O.I. H.G. S.X.
0.40 50.8 At5g52880 835365 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.38 46.7 At1g28320 839726 DEG15 Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH. O.I. H.G. S.X.
0.38 46.7 At3g29270 822584 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:unknown;C:unknown;MPO O.I. H.G. S.X.
0.38 46.7 At1g68160 843144 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;POF O.I. H.G. S.X.
0.37 45.0 At2g18250 816341 ATCOAD (4-phosphopantetheine adenylyltransferase) At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of dephospho-CoA from pantetheine 4'-phosphate. The enzyme is involved in coenzyme A biosynthesis. O.I. H.G. S.X.
0.37 45.0 At3g05250 819689 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPVOF O.I. H.G. S.X.
0.37 45.0 At4g19670 827711 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFB O.I. H.G. S.X.
0.37 45.0 At1g72175 843549 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV O.I. H.G. S.X.
0.36 43.6 At1g69980 843335 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.
0.36 43.6 At4g03080 828097 kelch repeat-containing serine/threonine phosphoesterase family protein F:hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, iron ion binding, phosphoprotein phosphatase activity;P:unknown;C:plasma membrane;MOPFBAV O.I. H.G. S.X.
0.36 43.6 At5g63910 836512 FCLY (FARNESYLCYSTEINE LYASE) encodes for a farnesylcysteine lyase (EC 1.8.3.5 - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate. O.I. H.G. S.X.
0.36 43.6 At3g53090 824475 UPL7 encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. O.I. H.G. S.X.
0.36 43.6 At3g05210 819685 ERCC1 encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10. O.I. H.G. S.X.
0.35 41.6 At3g59950 825165 autophagy 4b (APG4b) F:peptidase activity;P:autophagy;C:chloroplast;MOFP O.I. H.G. S.X.
0.35 41.6 At5g63280 836448 zinc finger (C2H2 type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system, intracellular;MPO O.I. H.G. S.X.
0.35 41.6 At5g25360 832608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.35 41.6 At1g10940 837637 SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4) Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute. O.I. H.G. S.X.
0.34 39.8 At3g12100 820384 cation efflux family protein / metal tolerance protein, putative F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA O.I. H.G. S.X.
0.34 39.8 At3g17880 821056 ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN) Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX. O.I. H.G. S.X.
0.34 39.8 At5g35560 833521 DENN (AEX-3) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFP O.I. H.G. S.X.
0.34 39.8 At5g49950 835059 embryogenesis-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFP O.I. H.G. S.X.
0.34 39.8 At1g35470 840440 SPla/RYanodine receptor (SPRY) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.34 39.8 At4g13730 827007 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;MOFPB O.I. H.G. S.X.
0.34 39.8 At3g53030 824469 SRPK4 (Ser/Arg-rich protein kinase 4) Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31. O.I. H.G. S.X.
0.33 38.1 At2g40410 818634 Ca(2+)-dependent nuclease, putative F:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. H.G. S.X.
0.33 38.1 At3g03740 821170 ATBPM4 (BTB-POZ and MATH domain 4) F:protein binding;P:biological_process unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.33 38.1 At1g14000 837960 VIK (VH1-INTERACTING KINASE) Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling. O.I. H.G. S.X.
0.33 38.1 At1g21380 838737 VHS domain-containing protein / GAT domain-containing protein F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOB O.I. H.G. S.X.
0.33 38.1 At5g64813 836603 LIP1 (Light Insensitive Period1) The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis. O.I. H.G. S.X.
0.32 35.7 At4g15475 827219 F-box family protein (FBL4) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV O.I. H.G. S.X.
0.32 35.7 At1g24350 839051 - F:unknown;P:biological_process unknown;C:unknown;BOP O.I. H.G. S.X.
0.32 35.7 At3g15430 820782 regulator of chromosome condensation (RCC1) family protein F:Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOPBFAV O.I. H.G. S.X.
0.32 35.7 At5g55500 835643 XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE) Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions. O.I. H.G. S.X.
0.31 33.8 At4g31410 829268 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. H.G. S.X.
0.31 33.8 At2g36360 818209 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBA O.I. H.G. S.X.
0.31 33.8 At2g41790 818778 peptidase M16 family protein / insulinase family protein F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.30 32.1 At3g56840 824851 FAD-dependent oxidoreductase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPV O.I. H.G. S.X.
0.30 32.1 At4g05000 825842 VPS28-2 F:transporter activity;P:transport;C:ESCRT I complex;MFPO O.I. H.G. S.X.
0.30 32.1 At3g56740 824841 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOB O.I. H.G. S.X.
0.30 32.1 At4g27650 828876 PEL1 (PELOTA) Encodes Arabidopsis homolog of Drosophila pelota protein. O.I. H.G. S.X.
0.30 32.1 At1g48790 841301 mov34 family protein F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.30 32.1 At4g30360 829159 ATCNGC17 member of Cyclic nucleotide gated channel family O.I. H.G. S.X.
0.30 32.1 At4g27040 828812 VPS22 F:molecular_function unknown;P:vesicle-mediated transport;C:ESCRT II complex;MFOP O.I. H.G. S.X.
0.29 30.3 At3g04970 819657 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP O.I. H.G. S.X.
0.29 30.3 At1g77140 844050 VPS45 (VACUOLAR PROTEIN SORTING 45) A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face. O.I. H.G. S.X.
0.29 30.3 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. O.I. H.G. S.X.
0.28 30.3 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA O.I. H.G. S.X.
0.27 26.2 At1g60430 842338 ARPC3 (actin-related protein C3) F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOP O.I. H.G. S.X.
0.27 26.2 At2g17110 816215 unknown protein F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFBO O.I. H.G. S.X.
0.27 26.2 At5g07270 830618 ankyrin repeat family protein F:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVA O.I. H.G. S.X.
0.27 26.2 At4g32560 829391 paramyosin-related F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFAPV O.I. H.G. S.X.
0.27 26.2 At2g17190 816224 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:unknown;MOPFBVA O.I. H.G. S.X.
0.27 26.2 At5g09850 830845 transcription elongation factor-related F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:cytosol;MPOFBV O.I. H.G. S.X.
0.26 24.4 At4g16566 827357 histidine triad family protein / HIT family protein F:nucleotide binding, catalytic activity;P:nucleotide metabolic process;C:peroxisome;BOMFAP O.I. H.G. S.X.
0.26 24.4 At3g05090 819671 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV O.I. H.G. S.X.
0.26 24.4 At5g06260 830513 nucleolar protein-related F:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPF O.I. H.G. S.X.
0.26 24.4 At5g64500 836571 membrane protein-related F:molecular_function unknown;P:biological_process unknown;C:membrane;BOFMAP O.I. H.G. S.X.
0.26 24.4 At5g32470 833206 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;BOFAPM O.I. H.G. S.X.
0.25 22.6 At1g54370 841878 NHX5 F:sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity;P:lithium ion transport, sodium ion transport;C:integral to membrane;BMOPFA O.I. H.G. S.X.
0.25 22.6 At3g01150 821129 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1) Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. O.I. H.G. S.X.
0.24 20.7 At1g70570 843394 anthranilate phosphoribosyltransferase, putative F:anthranilate phosphoribosyltransferase activity, transferase activity, transferring glycosyl groups;P:tryptophan biosynthetic process, metabolic process;C:chloroplast;BOAP O.I. H.G. S.X.
0.23 19.3 At3g25800 822171 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) one of three genes encoding the protein phosphatase 2A regulatory subunit O.I. H.G. S.X.
0.23 19.3 At3g54840 824649 ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. O.I. H.G. S.X.
0.23 19.3 At1g68100 843138 IAR1 (IAA-ALANINE RESISTANT 1) member of IAA-alanine resistance protein 1 O.I. H.G. S.X.
0.23 19.3 At3g59770 825146 SAC9 Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses. O.I. H.G. S.X.
0.22 17.5 At4g26640 828771 WRKY20 member of WRKY Transcription Factor; Group I O.I. H.G. S.X.
0.22 17.5 At3g03570 821234 - F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPO O.I. H.G. S.X.
0.22 17.5 At5g43320 834350 ckl8 (Casein Kinase I-like 8) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA O.I. H.G. S.X.
0.22 17.5 At1g09920 837524 TRAF-type zinc finger-related F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP O.I. H.G. S.X.
0.22 17.5 At5g53530 835435 VPS26A (VACUOLAR PROTEIN SORTING 26A) Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. O.I. H.G. S.X.
0.21 15.8 At3g55830 824749 EPC1 (ECTOPICALLY PARTING CELLS) A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant. O.I. H.G. S.X.
0.21 15.8 At4g19350 827676 EMB3006 (embryo defective 3006) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PMF O.I. H.G. S.X.
0.21 15.8 At2g27600 817306 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. O.I. H.G. S.X.
0.20 14.4 At5g46190 834661 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOB O.I. H.G. S.X.
0.20 14.4 At2g35100 818076 ARAD1 (ARABINAN DEFICIENT 1) Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems. O.I. H.G. S.X.
0.20 14.4 At5g53850 835466 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, metal ion binding;P:unknown;C:chloroplast stroma, chloroplast;BMFOPA O.I. H.G. S.X.
0.19 12.7 At2g27900 817335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.19 12.7 At5g08290 830725 YLS8 Encodes Dim1 homolog. O.I. H.G. S.X.
0.19 12.7 At1g05430 837044 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.17 10.2 At4g17270 827441 Mo25 family protein F:binding;P:biological_process unknown;C:plasma membrane;MFPO O.I. H.G. S.X.
0.16 8.8 At1g10430 837583 PP2A-2 Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A. O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At3g57230	824890	AGL16 (AGAMOUS-LIKE 16)	MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.	O.I.	H.G.	S.X.
0.52	67.4	At1g34120	840311	IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I)	Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.	O.I.	H.G.	S.X.
0.46	59.8	At5g10790	830946	UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22)	Encodes a ubiquitin-specific protease.	O.I.	H.G.	S.X.
0.45	58.3	At2g01980	814729	SOS1 (SALT OVERLY SENSITIVE 1)	Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.	O.I.	H.G.	S.X.
0.44	57.2	At1g47310	841134	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.42	53.9	At5g05700	830454	ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)	Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.	O.I.	H.G.	S.X.
0.42	53.9	At1g49710	841394	FUT12 (FUCOSYLTRANSFERASE 12)	Encodes a protein with core α1,3-fucosyltransferase activity.	O.I.	H.G.	S.X.
0.42	53.9	At5g23520	832417	-	F:unknown;P:unknown;C:cytoplasm;FPMBO	O.I.	H.G.	S.X.
0.41	52.4	At5g61580	836279	PFK4 (PHOSPHOFRUCTOKINASE 4)	F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAV	O.I.	H.G.	S.X.
0.41	52.4	At5g43100	834326	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPFO	O.I.	H.G.	S.X.
0.40	50.8	At2g04620	815004	cation efflux family protein	F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;OBMFPAV	O.I.	H.G.	S.X.
0.40	50.8	At5g52880	835365	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	H.G.	S.X.
0.38	46.7	At1g28320	839726	DEG15	Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.	O.I.	H.G.	S.X.
0.38	46.7	At3g29270	822584	ubiquitin-protein ligase	F:ubiquitin-protein ligase activity;P:unknown;C:unknown;MPO	O.I.	H.G.	S.X.
0.38	46.7	At1g68160	843144	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	H.G.	S.X.
0.37	45.0	At2g18250	816341	ATCOAD (4-phosphopantetheine adenylyltransferase)	At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of dephospho-CoA from pantetheine 4'-phosphate. The enzyme is involved in coenzyme A biosynthesis.	O.I.	H.G.	S.X.
0.37	45.0	At3g05250	819689	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPVOF	O.I.	H.G.	S.X.
0.37	45.0	At4g19670	827711	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFB	O.I.	H.G.	S.X.
0.37	45.0	At1g72175	843549	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV	O.I.	H.G.	S.X.
0.36	43.6	At1g69980	843335	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.36	43.6	At4g03080	828097	kelch repeat-containing serine/threonine phosphoesterase family protein	F:hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, iron ion binding, phosphoprotein phosphatase activity;P:unknown;C:plasma membrane;MOPFBAV	O.I.	H.G.	S.X.
0.36	43.6	At5g63910	836512	FCLY (FARNESYLCYSTEINE LYASE)	encodes for a farnesylcysteine lyase (EC 1.8.3.5 - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate.	O.I.	H.G.	S.X.
0.36	43.6	At3g53090	824475	UPL7	encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.	O.I.	H.G.	S.X.
0.36	43.6	At3g05210	819685	ERCC1	encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10.	O.I.	H.G.	S.X.
0.35	41.6	At3g59950	825165	autophagy 4b (APG4b)	F:peptidase activity;P:autophagy;C:chloroplast;MOFP	O.I.	H.G.	S.X.
0.35	41.6	At5g63280	836448	zinc finger (C2H2 type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system, intracellular;MPO	O.I.	H.G.	S.X.
0.35	41.6	At5g25360	832608	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.35	41.6	At1g10940	837637	SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)	Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.	O.I.	H.G.	S.X.
0.34	39.8	At3g12100	820384	cation efflux family protein / metal tolerance protein, putative	F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA	O.I.	H.G.	S.X.
0.34	39.8	At3g17880	821056	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.	O.I.	H.G.	S.X.
0.34	39.8	At5g35560	833521	DENN (AEX-3) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFP	O.I.	H.G.	S.X.
0.34	39.8	At5g49950	835059	embryogenesis-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFP	O.I.	H.G.	S.X.
0.34	39.8	At1g35470	840440	SPla/RYanodine receptor (SPRY) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.34	39.8	At4g13730	827007	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;MOFPB	O.I.	H.G.	S.X.
0.34	39.8	At3g53030	824469	SRPK4 (Ser/Arg-rich protein kinase 4)	Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31.	O.I.	H.G.	S.X.
0.33	38.1	At2g40410	818634	Ca(2+)-dependent nuclease, putative	F:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.33	38.1	At3g03740	821170	ATBPM4 (BTB-POZ and MATH domain 4)	F:protein binding;P:biological_process unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.33	38.1	At1g14000	837960	VIK (VH1-INTERACTING KINASE)	Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.	O.I.	H.G.	S.X.
0.33	38.1	At1g21380	838737	VHS domain-containing protein / GAT domain-containing protein	F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOB	O.I.	H.G.	S.X.
0.33	38.1	At5g64813	836603	LIP1 (Light Insensitive Period1)	The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.	O.I.	H.G.	S.X.
0.32	35.7	At4g15475	827219	F-box family protein (FBL4)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV	O.I.	H.G.	S.X.
0.32	35.7	At1g24350	839051	-	F:unknown;P:biological_process unknown;C:unknown;BOP	O.I.	H.G.	S.X.
0.32	35.7	At3g15430	820782	regulator of chromosome condensation (RCC1) family protein	F:Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOPBFAV	O.I.	H.G.	S.X.
0.32	35.7	At5g55500	835643	XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)	Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.	O.I.	H.G.	S.X.
0.31	33.8	At4g31410	829268	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	H.G.	S.X.
0.31	33.8	At2g36360	818209	kelch repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBA	O.I.	H.G.	S.X.
0.31	33.8	At2g41790	818778	peptidase M16 family protein / insulinase family protein	F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;BOMFPAV	O.I.	H.G.	S.X.
0.30	32.1	At3g56840	824851	FAD-dependent oxidoreductase family protein	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPV	O.I.	H.G.	S.X.
0.30	32.1	At4g05000	825842	VPS28-2	F:transporter activity;P:transport;C:ESCRT I complex;MFPO	O.I.	H.G.	S.X.
0.30	32.1	At3g56740	824841	ubiquitin-associated (UBA)/TS-N domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOB	O.I.	H.G.	S.X.
0.30	32.1	At4g27650	828876	PEL1 (PELOTA)	Encodes Arabidopsis homolog of Drosophila pelota protein.	O.I.	H.G.	S.X.
0.30	32.1	At1g48790	841301	mov34 family protein	F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPO	O.I.	H.G.	S.X.
0.30	32.1	At4g30360	829159	ATCNGC17	member of Cyclic nucleotide gated channel family	O.I.	H.G.	S.X.
0.30	32.1	At4g27040	828812	VPS22	F:molecular_function unknown;P:vesicle-mediated transport;C:ESCRT II complex;MFOP	O.I.	H.G.	S.X.
0.29	30.3	At3g04970	819657	zinc finger (DHHC type) family protein	F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP	O.I.	H.G.	S.X.
0.29	30.3	At1g77140	844050	VPS45 (VACUOLAR PROTEIN SORTING 45)	A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face.	O.I.	H.G.	S.X.
0.29	30.3	At1g71190	843459	SAG18 (SENESCENCE ASSOCIATED GENE 18)	Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.	O.I.	H.G.	S.X.
0.28	30.3	At5g18190	831937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA	O.I.	H.G.	S.X.
0.27	26.2	At1g60430	842338	ARPC3 (actin-related protein C3)	F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOP	O.I.	H.G.	S.X.
0.27	26.2	At2g17110	816215	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFBO	O.I.	H.G.	S.X.
0.27	26.2	At5g07270	830618	ankyrin repeat family protein	F:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVA	O.I.	H.G.	S.X.
0.27	26.2	At4g32560	829391	paramyosin-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFAPV	O.I.	H.G.	S.X.
0.27	26.2	At2g17190	816224	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:unknown;MOPFBVA	O.I.	H.G.	S.X.
0.27	26.2	At5g09850	830845	transcription elongation factor-related	F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:cytosol;MPOFBV	O.I.	H.G.	S.X.
0.26	24.4	At4g16566	827357	histidine triad family protein / HIT family protein	F:nucleotide binding, catalytic activity;P:nucleotide metabolic process;C:peroxisome;BOMFAP	O.I.	H.G.	S.X.
0.26	24.4	At3g05090	819671	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV	O.I.	H.G.	S.X.
0.26	24.4	At5g06260	830513	nucleolar protein-related	F:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPF	O.I.	H.G.	S.X.
0.26	24.4	At5g64500	836571	membrane protein-related	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOFMAP	O.I.	H.G.	S.X.
0.26	24.4	At5g32470	833206	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;BOFAPM	O.I.	H.G.	S.X.
0.25	22.6	At1g54370	841878	NHX5	F:sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity;P:lithium ion transport, sodium ion transport;C:integral to membrane;BMOPFA	O.I.	H.G.	S.X.
0.25	22.6	At3g01150	821129	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	O.I.	H.G.	S.X.
0.24	20.7	At1g70570	843394	anthranilate phosphoribosyltransferase, putative	F:anthranilate phosphoribosyltransferase activity, transferase activity, transferring glycosyl groups;P:tryptophan biosynthetic process, metabolic process;C:chloroplast;BOAP	O.I.	H.G.	S.X.
0.23	19.3	At3g25800	822171	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	one of three genes encoding the protein phosphatase 2A regulatory subunit	O.I.	H.G.	S.X.
0.23	19.3	At3g54840	824649	ARA6	Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.	O.I.	H.G.	S.X.
0.23	19.3	At1g68100	843138	IAR1 (IAA-ALANINE RESISTANT 1)	member of IAA-alanine resistance protein 1	O.I.	H.G.	S.X.
0.23	19.3	At3g59770	825146	SAC9	Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.	O.I.	H.G.	S.X.
0.22	17.5	At4g26640	828771	WRKY20	member of WRKY Transcription Factor; Group I	O.I.	H.G.	S.X.
0.22	17.5	At3g03570	821234	-	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPO	O.I.	H.G.	S.X.
0.22	17.5	At5g43320	834350	ckl8 (Casein Kinase I-like 8)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA	O.I.	H.G.	S.X.
0.22	17.5	At1g09920	837524	TRAF-type zinc finger-related	F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP	O.I.	H.G.	S.X.
0.22	17.5	At5g53530	835435	VPS26A (VACUOLAR PROTEIN SORTING 26A)	Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	O.I.	H.G.	S.X.
0.21	15.8	At3g55830	824749	EPC1 (ECTOPICALLY PARTING CELLS)	A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant.	O.I.	H.G.	S.X.
0.21	15.8	At4g19350	827676	EMB3006 (embryo defective 3006)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PMF	O.I.	H.G.	S.X.
0.21	15.8	At2g27600	817306	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.	O.I.	H.G.	S.X.
0.20	14.4	At5g46190	834661	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOB	O.I.	H.G.	S.X.
0.20	14.4	At2g35100	818076	ARAD1 (ARABINAN DEFICIENT 1)	Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.	O.I.	H.G.	S.X.
0.20	14.4	At5g53850	835466	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, metal ion binding;P:unknown;C:chloroplast stroma, chloroplast;BMFOPA	O.I.	H.G.	S.X.
0.19	12.7	At2g27900	817335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	H.G.	S.X.
0.19	12.7	At5g08290	830725	YLS8	Encodes Dim1 homolog.	O.I.	H.G.	S.X.
0.19	12.7	At1g05430	837044	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.17	10.2	At4g17270	827441	Mo25 family protein	F:binding;P:biological_process unknown;C:plasma membrane;MFPO	O.I.	H.G.	S.X.
0.16	8.8	At1g10430	837583	PP2A-2	Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.	O.I.	H.G.	S.X.

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Gene ID	Os04g0461300
Gene name
Homology with Arabidopsis	Similar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=3e-7)
Module size	6 genes
NF	0.23
%ile	21.3

Co-expression analysis

Gene ID Os04g0461300 Gene name Homology with ArabidopsisSimilar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=3e-7) Module size 6 genes NF 0.23 %ile 21.3

Co-expressed genes

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Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0461300

Gene name
Homology with Arabidopsis Similar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=3e-7)

Module size 6 genes

NF 0.23

%ile 21.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays