CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0458600

Gene name
Homology with Arabidopsis Similar to At3g47800: aldose 1-epimerase family protein (HF=3e-3)

Module size 6 genes

NF 0.12

%ile 9.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.91 Os04g0458600 AK106058.1 - Non-cell-autonomous protein pathway2 3e-3 At3g47800 aldose 1-epimerase family protein O.I. H.G. S.X.
0.13 8.2 0.95 Os01g0690600 NM_192136.1 - Protein kinase family protein 3e-3 At1g66980 protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein O.I. H.G. S.X.
0.10 5.7 0.98 Os06g0484000 9634.m02764 - - 5e+0 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) O.I. H.G. S.X.
0.09 4.9 0.96 Os01g0926600 9633.m00180 - Pectin-glucuronyltransferase 3e+0 At5g02160 unknown protein O.I. H.G. S.X.
0.07 3.7 0.96 Os08g0539200 AK109065.1 - Conserved hypothetical protein 2e+0 At3g22820 allergen-related O.I. H.G. S.X.
0.07 3.7 0.96 Os11g0176900 9639.m00695 - - 5e+0 At1g12310 calmodulin, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.9 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.8 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.074 1 GO:0009987 Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage