CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0453400

Gene name
Homology with Arabidopsis Similar to At4g21480: carbohydrate transmembrane transporter/ sugar:hydrogen symporter (HF=1e-2)

Module size 6 genes

NF 0.08

%ile 6.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os04g0453400 AK070018.1 - Sugar transporter family protein 1e-2 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter O.I. H.G. S.X.
0.10 5.7 0.91 Os06g0636600 AK119586.1 - Protein kinase domain containing protein 5e-18 At1g62400 HT1 (high leaf temperature 1) O.I. H.G. S.X.
0.10 5.7 0.93 Os08g0510700 AK101254.1 - Myb, DNA-binding domain containing protein 5e-3 At4g16240 unknown protein O.I. H.G. S.X.
0.07 3.7 0.94 Os09g0565400 AK067821.1 - Lipoprotein, type 6 family protein 2e-2 At1g24560 unknown protein O.I. H.G. S.X.
0.04 2.0 0.94 Os03g0581600 BQ906717 - DAG protein, chloroplast precursor 8e-5 At1g11430 plastid developmental protein DAG, putative O.I. H.G. S.X.
0.04 2.0 0.91 Os09g0513900 AK107699.1 - Conserved hypothetical protein 3e-1 At2g47480 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.6 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.7 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.5 99.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.4 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.043 1 GO:0008643 The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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