CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0448900

Gene name
Homology with Arabidopsis Similar to At5g67030: ABA1 (ABA DEFICIENT 1) (HF=9e-11)

Module size 6 genes

NF 0.23

%ile 21.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.92 Os04g0448900 AB050884.1 - Zeaxanthin epoxidase 9e-11 At5g67030 ABA1 (ABA DEFICIENT 1) O.I. H.G. S.X.
0.50 68.0 0.92 Os11g0130200 AK059458.1 - Protein of unknown function DUF309 domaincontaining protein 8e-3 At2g28790 osmotin-like protein, putative O.I. H.G. S.X.
0.40 51.1 0.95 Os01g0279700 AK067683.1 - Major facilitator superfamily protein 2e-48 At4g00370 ANTR2 O.I. H.G. S.X.
0.20 16.5 0.92 Os04g0321800 AK069106.1 - Protein phosphatase 2C-like domain containingprotein 1e-15 At5g36250 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.13 8.2 0.94 Os03g0850600 AK067191.1 - Conserved hypothetical protein 6e-1 At5g42450 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.09 4.9 0.92 Os05g0323800 AK101553.1 - ABC-1 domain containing protein 3e-28 At1g79600 ABC1 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.2 99.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.0 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0016123 The chemical reactions and pathways resulting in the formation of xanthophylls, oxygen-containing carotenoids.
0.250 1 GO:0009688 The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.
0.222 1 GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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