CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0448600

Gene name
Homology with Arabidopsis Similar to At1g44790: ChaC-like family protein (HF=2e-3)

Module size 9 genes

NF 0.59

%ile 79.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 69.6 0.95 Os04g0448600 AK068709.1 - ChaC-like protein family protein 2e-3 At1g44790 ChaC-like family protein O.I. H.G. S.X.
0.78 93.4 0.97 Os07g0171100 AK066475.1 - TPR-like domain containing protein 2e-16 At1g55480 binding / protein binding O.I. H.G. S.X.
0.71 89.6 0.97 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein O.I. H.G. S.X.
0.71 89.6 0.97 Os12g0420200 CB652532 - 38 kDa ribosome-associated protein 1e+0 At1g31250 proline-rich family protein O.I. H.G. S.X.
0.63 82.7 0.97 Os08g0162600 AK060121.1 - Rubredoxin-type Fe(Cys)4 protein family protein 6e-22 At5g17170 ENH1 (enhancer of sos3-1) O.I. H.G. S.X.
0.60 79.7 0.97 Os03g0311300 AK073167.1 - The start codon is not identified. 1e-27 At1g56500 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.56 76.3 0.97 Os02g0764500 AK066291.1 - Lhca5 protein 8e-3 At1g45474 LHCA5 O.I. H.G. S.X.
0.50 68.0 0.97 Os11g0242400 AK067025.1 - Rieske [2Fe-2S] region domain containing protein 1e-1 At1g71500 Rieske (2Fe-2S) domain-containing protein O.I. H.G. S.X.
0.29 31.1 0.97 Os04g0490800 AK066522.1 - 4-nitrophenylphosphatase-like protein 1e-28 At5g36700 PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.5 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.8 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.6 99.5 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
15.3 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.114 2 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
0.095 1 GO:0009765 Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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