CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0430000

Gene name
Homology with Arabidopsis Similar to At4g01330: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (HF=7e-8)

Module size 7 genes

NF 0.42

%ile 52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.94 Os04g0430000 AK100142.1 - Ser Thr specific protein kinase-like protein 7e-8 At4g01330 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.
0.50 68.0 0.94 Os10g0504600 AY224548.1 - Chorion 2 family protein 3e-8 At5g52280 protein transport protein-related O.I. H.G. S.X.
0.46 60.9 0.93 Os12g0619000 AK102525.1 - IQ calmodulin-binding region domain containingprotein 7e-14 At3g22190 IQD5 (IQ-domain 5) O.I. H.G. S.X.
0.44 58.1 0.94 Os07g0681100 AK099672.1 - Atypical receptor-like kinase MARK 1e-9 At3g08680 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.42 53.9 0.94 Os04g0685900 AK063635.1 - Receptor-like protein kinase-like protein(Fragment) 3e-2 At2g01820 leucine-rich repeat protein kinase, putative O.I. H.G. S.X.
0.27 27.5 0.94 Os10g0363700 BI803810 - Conserved hypothetical protein 4e+0 At4g14430 IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10) O.I. H.G. S.X.
0.19 15.1 0.94 Os12g0169100 AK067565.1 - Plant protein of unknown function DUF869 familyprotein 2e-6 At1g21810 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.3 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.5 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.091 1 GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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