CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0429300

Gene name
Homology with Arabidopsis Similar to At4g36900: RAP2.10 (related to AP2 10) (HF=2e-1)

Module size 6 genes

NF 0.64

%ile 86.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.93 Os04g0429300 AK107268.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At4g36900 RAP2.10 (related to AP2 10) O.I. H.G. S.X.
0.67 87.2 0.90 Os04g0497300 AF257779.1 - Protein of unknown function DUF1138 family protein 3e-1 At1g13330 - O.I. H.G. S.X.
0.67 87.2 0.93 Os05g0486300 AK073521.1 - NOT2/NOT3/NOT5 family protein 2e+0 At5g59710 VIP2 (VIRE2 INTERACTING PROTEIN2) O.I. H.G. S.X.
0.50 68.0 0.94 Os02g0487300 AK107615.1 - Conserved hypothetical protein 7e-1 At4g01590 unknown protein O.I. H.G. S.X.
0.36 44.0 0.93 Os04g0429400 AK108728.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e-2 At5g67490 unknown protein O.I. H.G. S.X.
0.36 44.0 0.94 Os03g0694500 AK100981.1 - Permease 1 4e+0 At3g19690 pathogenesis-related protein, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.0 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.7 98.4 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
11.1 98.2 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
10.6 98.1 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
9.7 98.0 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
8.2 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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