CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0429050

Gene name
Homology with Arabidopsis Similar to At5g07310: AP2 domain-containing transcription factor, putative (HF=4e-1)

Module size 26 genes

NF 0.56

%ile 75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.96 Os04g0429050 9632.m03363 - - 4e-1 At5g07310 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.72 89.8 0.98 Os06g0726900 9634.m04971 - Zn-finger, modified RING domain containing protein 2e-1 At1g52740 HTA9 (HISTONE H2A PROTEIN 9) O.I. H.G. S.X.
0.67 87.2 0.97 Os10g0402400 NM_196396.1 - Transferase family protein 1e+1 At5g11590 TINY2 (TINY2) O.I. H.G. S.X.
0.66 83.9 0.98 Os02g0734700 9630.m04916 - Conserved hypothetical protein 1e+0 At1g17520 DNA-binding protein, putative O.I. H.G. S.X.
0.64 83.4 0.97 Os03g0193700 9639.m02916 - Rab geranylgeranyltransferase, beta subunit 3e-1 At2g46650 CB5-C (CYTOCHROME B5 ISOFORM C) O.I. H.G. S.X.
0.64 83.4 0.97 Os01g0717275 9629.m05037 - - 2e+0 At1g29790 - O.I. H.G. S.X.
0.63 82.7 0.97 Os04g0500600 AK107850.1 - Hypothetical protein 8e+0 At3g45525 - O.I. H.G. S.X.
0.60 79.7 0.97 Os12g0178600 9640.m00718 - - 3e-1 At2g34300 dehydration-responsive protein-related O.I. H.G. S.X.
0.60 79.7 0.98 Os08g0424900 9636.m03291 - - 3e+0 At5g11990 proline-rich family protein O.I. H.G. S.X.
0.59 78.0 0.98 Os04g0553100 9632.m04503 - - 5e+0 At5g10336 unknown protein O.I. H.G. S.X.
0.57 77.0 0.98 Os10g0207300 NM_195478.1 - - 4e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.56 76.3 0.98 Os10g0496200 9638.m03123 - - 3e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.55 73.7 0.98 Os04g0453300 9632.m03584 - Monosaccharide transporter 1 7e-1 At1g11260 STP1 (SUGAR TRANSPORTER 1) O.I. H.G. S.X.
0.55 73.7 0.97 Os03g0821400 AK069793.1 - Hypothetical protein 4e-1 At2g35900 unknown protein O.I. H.G. S.X.
0.55 73.7 0.97 Os01g0122300 NM_184158.1 - TRAF-like domain containing protein 7e+0 At1g53400 unknown protein O.I. H.G. S.X.
0.54 71.9 0.98 Os03g0597300 NM_184803.1 - - 1e+0 At3g42130 glycine-rich protein O.I. H.G. S.X.
0.54 71.9 0.97 Os11g0622200 AK111148.1 - Hypothetical protein 1e+0 At5g02560 HTA12 O.I. H.G. S.X.
0.53 71.3 0.97 Os12g0549000 9640.m03515 - - 2e+0 At5g50480 NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6) O.I. H.G. S.X.
0.51 68.7 0.97 Os04g0276700 9632.m01908 - - 2e-1 At1g64107 - O.I. H.G. S.X.
0.51 68.7 0.98 Os01g0573300 NM_193601.1 - - 2e-1 At1g28290 AGP31 (arabinogalactan-protein 31) O.I. H.G. S.X.
0.47 62.3 0.97 Os01g0240750 9629.m01365 - - 4e-1 At5g26720 unknown protein O.I. H.G. S.X.
0.46 60.9 0.97 Os11g0604200 9639.m03559 - - 5e+0 At5g47080 CKB1 O.I. H.G. S.X.
0.46 60.9 0.96 Os08g0442600 AK105576.1 - - 7e-1 At3g55420 unknown protein O.I. H.G. S.X.
0.45 58.8 0.97 Os07g0561600 9633.m01121 - - 4e-1 At4g31580 SRZ-22 O.I. H.G. S.X.
0.40 51.1 0.97 Os04g0529900 9632.m04301 - Hypothetical protein 2e-2 At1g52830 IAA6 (INDOLE-3-ACETIC ACID 6) O.I. H.G. S.X.
0.38 46.9 0.97 Os05g0454100 9633.m03516 - - 2e+1 At5g42567 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.96	Os04g0429050	9632.m03363	-	-	4e-1	At5g07310	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.72	89.8	0.98	Os06g0726900	9634.m04971	-	Zn-finger, modified RING domain containing protein	2e-1	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os10g0402400	NM_196396.1	-	Transferase family protein	1e+1	At5g11590	TINY2 (TINY2)	O.I.	H.G.	S.X.
0.66	83.9	0.98	Os02g0734700	9630.m04916	-	Conserved hypothetical protein	1e+0	At1g17520	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.64	83.4	0.97	Os03g0193700	9639.m02916	-	Rab geranylgeranyltransferase, beta subunit	3e-1	At2g46650	CB5-C (CYTOCHROME B5 ISOFORM C)	O.I.	H.G.	S.X.
0.64	83.4	0.97	Os01g0717275	9629.m05037	-	-	2e+0	At1g29790	-	O.I.	H.G.	S.X.
0.63	82.7	0.97	Os04g0500600	AK107850.1	-	Hypothetical protein	8e+0	At3g45525	-	O.I.	H.G.	S.X.
0.60	79.7	0.97	Os12g0178600	9640.m00718	-	-	3e-1	At2g34300	dehydration-responsive protein-related	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os08g0424900	9636.m03291	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.
0.59	78.0	0.98	Os04g0553100	9632.m04503	-	-	5e+0	At5g10336	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	0.98	Os10g0207300	NM_195478.1	-	-	4e-1	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os10g0496200	9638.m03123	-	-	3e-1	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os04g0453300	9632.m03584	-	Monosaccharide transporter 1	7e-1	At1g11260	STP1 (SUGAR TRANSPORTER 1)	O.I.	H.G.	S.X.
0.55	73.7	0.97	Os03g0821400	AK069793.1	-	Hypothetical protein	4e-1	At2g35900	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.97	Os01g0122300	NM_184158.1	-	TRAF-like domain containing protein	7e+0	At1g53400	unknown protein	O.I.	H.G.	S.X.
0.54	71.9	0.98	Os03g0597300	NM_184803.1	-	-	1e+0	At3g42130	glycine-rich protein	O.I.	H.G.	S.X.
0.54	71.9	0.97	Os11g0622200	AK111148.1	-	Hypothetical protein	1e+0	At5g02560	HTA12	O.I.	H.G.	S.X.
0.53	71.3	0.97	Os12g0549000	9640.m03515	-	-	2e+0	At5g50480	NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)	O.I.	H.G.	S.X.
0.51	68.7	0.97	Os04g0276700	9632.m01908	-	-	2e-1	At1g64107	-	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os01g0573300	NM_193601.1	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	O.I.	H.G.	S.X.
0.47	62.3	0.97	Os01g0240750	9629.m01365	-	-	4e-1	At5g26720	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.97	Os11g0604200	9639.m03559	-	-	5e+0	At5g47080	CKB1	O.I.	H.G.	S.X.
0.46	60.9	0.96	Os08g0442600	AK105576.1	-	-	7e-1	At3g55420	unknown protein	O.I.	H.G.	S.X.
0.45	58.8	0.97	Os07g0561600	9633.m01121	-	-	4e-1	At4g31580	SRZ-22	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os04g0529900	9632.m04301	-	Hypothetical protein	2e-2	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.
0.38	46.9	0.97	Os05g0454100	9633.m03516	-	-	2e+1	At5g42567	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.2 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.3 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.0 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
17.2	98.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.3	98.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.0	98.4	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os04g0429050
Gene name
Homology with Arabidopsis	Similar to At5g07310: AP2 domain-containing transcription factor, putative (HF=4e-1)
Module size	26 genes
NF	0.56
%ile	75.2

Co-expression analysis

Gene ID Os04g0429050 Gene name Homology with ArabidopsisSimilar to At5g07310: AP2 domain-containing transcription factor, putative (HF=4e-1) Module size 26 genes NF 0.56 %ile 75.2

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0429050

Gene name
Homology with Arabidopsis Similar to At5g07310: AP2 domain-containing transcription factor, putative (HF=4e-1)

Module size 26 genes

NF 0.56

%ile 75.2

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays