CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0419600

Gene name
Homology with Arabidopsis Similar to At1g09200: histone H3 (HF=5e-21)

Module size 8 genes

NF 0.46

%ile 58.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.78 Os04g0419600 CR282432 - Histone H3 5e-21 At1g09200 histone H3 O.I. H.G. S.X.
0.55 73.7 0.75 Os11g0661900 AK064062.1 - Hypothetical protein 8e-1 At5g57640 - O.I. H.G. S.X.
0.50 68.0 0.78 Os12g0628400 AK061110.1 - Fatty acid hydroxylase domain containing protein 1e-8 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) O.I. H.G. S.X.
0.48 63.7 0.77 Os02g0303200 AK107731.1 - Hypothetical protein 1e+0 At3g26060 ATPRX Q O.I. H.G. S.X.
0.38 46.9 0.76 Os02g0302900 AK110752.1 - Reticulon family protein 1e-2 At5g11060 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) O.I. H.G. S.X.
0.36 44.0 0.78 Os05g0462700 AK105816.1 - Histone H4 variant TH011 6e-24 At5g59690 histone H4 O.I. H.G. S.X.
0.36 44.0 0.79 Os01g0866200 CA754851 - Histone H3 3e-47 At1g09200 histone H3 O.I. H.G. S.X.
0.33 38.8 0.78 Os08g0106100 AK071868.1 - Hypothetical protein 4e-1 At3g45870 integral membrane family protein / nodulin MtN21-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
39.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.3 97.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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