CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0418000

Gene name
Homology with Arabidopsis Similar to At1g47420: - (HF=6e-1)

Module size 14 genes

NF 0.71

%ile 93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.97 Os04g0418000 AK106155.1 - Conserved hypothetical protein 6e-1 At1g47420 - O.I. H.G. S.X.
0.85 96.1 0.98 Os07g0585800 AK105064.1 - NADH-ubiquinone oxidoreductase 18 kDa subunit (EC1.6.5.3) (EC 1.6.99.3) (Complex I-18KD) (CI-18KD)(Fragment) 7e-9 At5g67590 FRO1 (FROSTBITE1) O.I. H.G. S.X.
0.81 94.8 0.97 Os03g0390400 AB025187.1 - Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein) 7e-37 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) O.I. H.G. S.X.
0.80 94.6 0.98 Os12g0169700 AK103904.1 - Ferripyochelin-binding protein-like 8e-16 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.79 93.6 0.97 Os01g0649100 AF444195.1 - Malate dehydrogenase 1e-33 At1g53240 malate dehydrogenase (NAD), mitochondrial O.I. H.G. S.X.
0.75 91.9 0.98 Os04g0398500 AK059519.1 - Ubiquinol-cytochrome c reductase iron-sulfursubunit, mitochondrial precursor (EC 1.10.2.2) (Rieskeiron-sulfur protein) (RISP) 7e-10 At5g13430 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative O.I. H.G. S.X.
0.74 91.4 0.97 Os08g0431500 AK058993.1 - Conserved hypothetical protein 3e-20 At4g16450 unknown protein O.I. H.G. S.X.
0.73 91.1 0.97 Os05g0301700 AK070578.1 - Cytochrome c1 (Fragment) 5e-79 At3g27240 cytochrome c1, putative O.I. H.G. S.X.
0.70 88.4 0.97 Os07g0222800 AK100823.1 - Acyl carrier protein, mitochondrial precursor(ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit)(MtACP-1) 1e-1 At2g44620 MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1) O.I. H.G. S.X.
0.65 83.8 0.97 Os05g0553000 AK071143.1 - ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14) 0 At5g08670 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism O.I. H.G. S.X.
0.63 82.7 0.97 Os03g0713400 AK058713.1 - NADH-ubiquinone oxidoreductase 75 kDa subunit,mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)(Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complexI subunit) 7e-92 At5g37510 EMB1467 (embryo defective 1467) O.I. H.G. S.X.
0.56 76.3 0.98 Os11g0162200 AK060396.1 - - 3e-7 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative O.I. H.G. S.X.
0.51 68.7 0.97 Os07g0495200 AK070990.1 - ATP synthase delta' chain, mitochondrial precursor(EC 3.6.3.14) 1e-1 At5g47030 ATP synthase delta' chain, mitochondrial O.I. H.G. S.X.
0.50 68.0 0.98 Os03g0774200 AK119532.1 - NADH-ubiquinone oxidoreductase subunit 8 (EC1.6.5.3) 2e-71 At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.1 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.6 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.118 1 GO:0006123 The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
0.118 1 GO:0009060 The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
0.111 1 GO:0006120 The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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