CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0413600

Gene name
Homology with Arabidopsis Similar to At3g11510: 40S ribosomal protein S14 (RPS14B) (HF=4e-84)

Module size 9 genes

NF 0.48

%ile 63.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 83.4 0.97 Os04g0413600 AK121192.1 - 40S ribosomal protein S14 (Clone MCH2) 4e-84 At3g11510 40S ribosomal protein S14 (RPS14B) O.I. H.G. S.X.
0.64 83.4 0.98 Os03g0851000 AK060496.1 - Transcription factor homolog BTF3-like protein 8e-12 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative O.I. H.G. S.X.
0.59 78.0 0.97 Os08g0559200 9636.m04535 - S25 ribosomal protein family protein 9e-33 At4g39200 40S ribosomal protein S25 (RPS25E) O.I. H.G. S.X.
0.50 68.0 0.98 Os01g0823300 D38011.1 - Ribosomal protein S26 2e-12 At2g40590 40S ribosomal protein S26 (RPS26B) O.I. H.G. S.X.
0.46 60.9 0.98 Os08g0207000 AK058705.1 - 40S ribosomal protein S11 (S18) (YS12) (RP41) 4e-60 At3g48930 EMB1080 (embryo defective 1080) O.I. H.G. S.X.
0.44 58.1 0.98 Os06g0562600 AK067114.1 - T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36) 2e-88 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative O.I. H.G. S.X.
0.38 46.9 0.98 Os02g0534800 AK101459.1 - 40S ribosomal protein S14 (Clone MCH2) 3e-67 At3g11510 40S ribosomal protein S14 (RPS14B) O.I. H.G. S.X.
0.32 36.3 0.98 Os03g0352800 AK059673.1 - Acyl carrier protein-like family protein 3e-14 At1g65290 mtACP2 (mitochondrial acyl carrier protein 2) O.I. H.G. S.X.
0.31 34.5 0.98 Os01g0686800 D38231.1 - Guanine nucleotide-binding protein betasubunit-like protein (GPB-LR) (RWD) 1e-23 At1g18080 ATARCA O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.7 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.4 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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