CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0406100

Gene name
Homology with Arabidopsis Similar to At5g62950: catalytic/ nucleotide binding (HF=4e+0)

Module size 7 genes

NF 0.40

%ile 47.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.99 Os04g0406100 9640.m03477 - - 4e+0 At5g62950 catalytic/ nucleotide binding O.I. H.G. S.X.
0.67 87.2 0.99 Os03g0326550 9631.m02095 - - 2e+0 At4g26965 NADH:ubiquinone oxidoreductase family protein O.I. H.G. S.X.
0.53 71.3 0.99 Os08g0149500 9636.m00466 - - 6e+0 At5g19810 proline-rich extensin-like family protein O.I. H.G. S.X.
0.50 68.0 0.99 Os09g0256501 9637.m00620 - - 7e-3 At2g22320 unknown protein O.I. H.G. S.X.
0.32 36.3 0.99 Os09g0459400 9637.m02518 - - 1e+1 At5g15760 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative O.I. H.G. S.X.
0.22 19.4 0.99 Os01g0255500 NM_187903.1 - - 1e+0 At5g56880 unknown protein O.I. H.G. S.X.
0.19 15.1 0.99 Os10g0173200 NM_195093.1 - - 4e+0 At5g40370 glutaredoxin, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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