CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0405800

Gene name
Homology with Arabidopsis Similar to At3g18680: aspartate/glutamate/uridylate kinase family protein (HF=8e-4)

Module size 6 genes

NF 0.24

%ile 22.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.96 Os04g0405800 AK108757.1 - Uridylate kinase (EC 2.7.4.-) (UK) (Uridinemonophosphate kinase) (UMP kinase) 8e-4 At3g18680 aspartate/glutamate/uridylate kinase family protein O.I. H.G. S.X.
0.60 79.7 0.96 Os04g0610000 AK060380.1 - Conserved hypothetical protein 1e+0 At5g10330 HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) O.I. H.G. S.X.
0.40 51.1 0.96 Os01g0835600 AK064796.1 - HMG-I and HMG-Y, DNA-binding domain containingprotein 2e-4 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) O.I. H.G. S.X.
0.25 24.1 0.96 Os03g0187100 AK060541.1 - Hypothetical protein 1e+0 At2g40316 unknown protein O.I. H.G. S.X.
0.22 19.4 0.96 Os01g0169500 AK121259.1 - ARM repeat fold domain containing protein 5e-2 At3g27670 RST1 (RESURRECTION1) O.I. H.G. S.X.
0.12 7.2 0.95 Os01g0234800 AK063827.1 - Vesicle trafficking protein SEC22b (SEC22 vesicletrafficking protein- like 1) 2e-26 At1g11890 SEC22 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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