Co-expression analysis

Gene ID Os04g0401800
Gene name
Homology with ArabidopsisSimilar to At5g65180: - (HF=2e-1)
Module size 7 genes
NF 0.12
%ile 9.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4660.90.91Os04g0401800AK103868.1-DNA repair metallo-beta-lactamase domaincontaining protein2e-1At5g65180-O.I.H.G.S.X.
0.4660.90.92Os08g03697009636.m02793-HesB/YadR/YfhF family protein7e-5At5g03905hesB-like domain-containing proteinO.I.H.G.S.X.
0.127.20.91Os01g0144600AK061501.1-Hypothetical protein5e-1At5g25220KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)O.I.H.G.S.X.
0.094.90.92Os07g0673700AK071934.1-Cyclin-like F-box domain containing protein4e+0At3g43583unknown proteinO.I.H.G.S.X.
0.084.20.92Os10g0412000AK066864.1-Phospholipid-translocating P-type ATPase, flippasefamily protein8e-45At1g59820ALA3 (Aminophospholipid ATPase3)O.I.H.G.S.X.
0.084.20.91Os07g0657500AK058476.1--3e-2At5g64905PROPEP3 (Elicitor peptide 3 precursor)O.I.H.G.S.X.
0.042.00.93Os01g0859600AK072151.1-Cyclin-like F-box domain containing protein2e-5At1g67190F-box family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.299.2GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.497.9GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.497.5GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.897.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.597.2GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.2952.1.A1_a_at, orthologous to the query gene, Os04g0401800

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7087.0Zm.2952.1.A1_a_atAt5g65180hypothetical protein LOC100192920-2e-3At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)O.I.H.G.S.X.
0.6179.5Zm.405.1.A1_atAt5g65180hypothetical LOC541674-2e-1At5g05340peroxidase, putativeO.I.H.G.S.X.
0.5775.1Zm.13859.1.S1_atAt5g65180methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1-1e-12At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.5571.6Zm.7122.1.A1_atAt5g65180--2e+0At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.4658.4Zm.7121.2.S1_atAt5g65180--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.4352.8Zm.12225.1.A1_atAt5g65180DIP1-2e+0At3g14340unknown proteinO.I.H.G.S.X.
0.4048.5Zm.1269.1.A1_atAt5g65180--5e+0At5g53980ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)O.I.H.G.S.X.
0.2521.3Zm.7127.1.A1_atAt5g65180nonspecific lipid-transfer protein-8e+0At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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