CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0401800

Gene name
Homology with Arabidopsis Similar to At5g65180: - (HF=2e-1)

Module size 7 genes

NF 0.12

%ile 9.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.91 Os04g0401800 AK103868.1 - DNA repair metallo-beta-lactamase domaincontaining protein 2e-1 At5g65180 - O.I. H.G. S.X.
0.46 60.9 0.92 Os08g0369700 9636.m02793 - HesB/YadR/YfhF family protein 7e-5 At5g03905 hesB-like domain-containing protein O.I. H.G. S.X.
0.12 7.2 0.91 Os01g0144600 AK061501.1 - Hypothetical protein 5e-1 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) O.I. H.G. S.X.
0.09 4.9 0.92 Os07g0673700 AK071934.1 - Cyclin-like F-box domain containing protein 4e+0 At3g43583 unknown protein O.I. H.G. S.X.
0.08 4.2 0.92 Os10g0412000 AK066864.1 - Phospholipid-translocating P-type ATPase, flippasefamily protein 8e-45 At1g59820 ALA3 (Aminophospholipid ATPase3) O.I. H.G. S.X.
0.08 4.2 0.91 Os07g0657500 AK058476.1 - - 3e-2 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) O.I. H.G. S.X.
0.04 2.0 0.93 Os01g0859600 AK072151.1 - Cyclin-like F-box domain containing protein 2e-5 At1g67190 F-box family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.46	60.9	0.91	Os04g0401800	AK103868.1	-	DNA repair metallo-beta-lactamase domaincontaining protein	2e-1	At5g65180	-	O.I.	H.G.	S.X.
0.46	60.9	0.92	Os08g0369700	9636.m02793	-	HesB/YadR/YfhF family protein	7e-5	At5g03905	hesB-like domain-containing protein	O.I.	H.G.	S.X.
0.12	7.2	0.91	Os01g0144600	AK061501.1	-	Hypothetical protein	5e-1	At5g25220	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	O.I.	H.G.	S.X.
0.09	4.9	0.92	Os07g0673700	AK071934.1	-	Cyclin-like F-box domain containing protein	4e+0	At3g43583	unknown protein	O.I.	H.G.	S.X.
0.08	4.2	0.92	Os10g0412000	AK066864.1	-	Phospholipid-translocating P-type ATPase, flippasefamily protein	8e-45	At1g59820	ALA3 (Aminophospholipid ATPase3)	O.I.	H.G.	S.X.
0.08	4.2	0.91	Os07g0657500	AK058476.1	-	-	3e-2	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	O.I.	H.G.	S.X.
0.04	2.0	0.93	Os01g0859600	AK072151.1	-	Cyclin-like F-box domain containing protein	2e-5	At1g67190	F-box family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.2 99.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
21.2	99.2	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
9.4	97.9	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9	97.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4	97.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3	97.5	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9	97.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8	97.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5	97.2	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.211810.1.S1_at, orthologous to the query gene, Os04g0401800

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.68 91.3 PtpAffx.211810.1.S1_at At5g65180 hypothetical protein - 1e-20 At3g26680 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) O.I. H.G. S.X.
0.59 84.9 PtpAffx.202115.1.S1_at At5g65180 hypothetical protein - 3e-24 At2g44730 transcription factor O.I. H.G. S.X.
0.59 84.9 Ptp.6019.2.S1_at At5g65180 hypothetical protein - 1e-25 At1g62040 ATG8C (autophagy 8c) O.I. H.G. S.X.
0.56 83.9 Ptp.7652.1.S1_s_at At5g65180 hypothetical protein - 7e-80 At5g01960 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.55 82.2 PtpAffx.222478.1.S1_at At5g65180 hypothetical protein - 1e-48 At1g67190 F-box family protein O.I. H.G. S.X.
0.52 79.4 PtpAffx.2533.1.A1_at At5g65180 hypothetical protein - 9e-6 At5g13810 glutaredoxin family protein O.I. H.G. S.X.
0.47 74.6 PtpAffx.210372.1.S1_s_at At5g65180 hypothetical protein - 2e-1 At3g49590 - O.I. H.G. S.X.
0.46 73.7 PtpAffx.4085.4.S1_at At5g65180 hypothetical protein - 3e-71 At3g59350 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.44 71.9 Ptp.1187.1.A1_s_at At5g65180 hypothetical protein - 2e-15 At5g43130 TAF4 (TBP-ASSOCIATED FACTOR 4) O.I. H.G. S.X.
0.44 71.9 PtpAffx.202512.1.S1_at At5g65180 hypothetical protein - 1e-74 At2g43160 epsin N-terminal homology (ENTH) domain-containing protein O.I. H.G. S.X.
0.42 68.6 Ptp.6019.2.S1_x_at At5g65180 hypothetical protein - 1e-25 At1g62040 ATG8C (autophagy 8c) O.I. H.G. S.X.
0.40 67.0 Ptp.5961.1.S1_a_at At5g65180 hypothetical protein - 6e-63 At3g23660 transport protein, putative O.I. H.G. S.X.
0.39 64.6 PtpAffx.120784.1.S1_at At5g65180 hypothetical protein - 6e-62 At1g14000 VIK (VH1-INTERACTING KINASE) O.I. H.G. S.X.
0.39 64.6 PtpAffx.7182.1.A1_at At5g65180 hypothetical protein - 9e-2 At1g79390 unknown protein O.I. H.G. S.X.
0.37 62.3 PtpAffx.205178.1.S1_s_at At5g65180 hypothetical protein - 4e-27 At5g65000 nucleotide-sugar transporter family protein O.I. H.G. S.X.
0.36 61.6 Ptp.3492.1.S1_s_at At5g65180 hypothetical protein - 2e-6 At4g34100 protein binding / zinc ion binding O.I. H.G. S.X.
0.36 61.6 Ptp.2701.1.S1_at At5g65180 hypothetical protein - 7e-9 At5g05760 SYP31 (SYNTAXIN OF PLANTS 31) O.I. H.G. S.X.
0.33 57.5 PtpAffx.152227.1.S1_at At5g65180 hypothetical protein - 6e-62 At1g36050 unknown protein O.I. H.G. S.X.
0.31 53.7 PtpAffx.77.2.A1_at At5g65180 - - 6e-26 At4g08455 BTB/POZ domain-containing protein O.I. H.G. S.X.
0.30 52.0 PtpAffx.5887.1.S1_a_at At5g65180 hypothetical protein - 6e-6 At5g63270 nitrate-responsive NOI protein, putative O.I. H.G. S.X.
0.20 34.6 PtpAffx.154446.1.S1_s_at At5g65180 hypothetical protein - 3e-23 At2g39270 adenylate kinase family protein O.I. H.G. S.X.
0.17 29.1 PtpAffx.213962.1.S1_x_at At5g65180 hypothetical protein - 1e-101 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.68	91.3	PtpAffx.211810.1.S1_at	At5g65180	hypothetical protein	-	1e-20	At3g26680	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	O.I.	H.G.	S.X.
0.59	84.9	PtpAffx.202115.1.S1_at	At5g65180	hypothetical protein	-	3e-24	At2g44730	transcription factor	O.I.	H.G.	S.X.
0.59	84.9	Ptp.6019.2.S1_at	At5g65180	hypothetical protein	-	1e-25	At1g62040	ATG8C (autophagy 8c)	O.I.	H.G.	S.X.
0.56	83.9	Ptp.7652.1.S1_s_at	At5g65180	hypothetical protein	-	7e-80	At5g01960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.55	82.2	PtpAffx.222478.1.S1_at	At5g65180	hypothetical protein	-	1e-48	At1g67190	F-box family protein	O.I.	H.G.	S.X.
0.52	79.4	PtpAffx.2533.1.A1_at	At5g65180	hypothetical protein	-	9e-6	At5g13810	glutaredoxin family protein	O.I.	H.G.	S.X.
0.47	74.6	PtpAffx.210372.1.S1_s_at	At5g65180	hypothetical protein	-	2e-1	At3g49590	-	O.I.	H.G.	S.X.
0.46	73.7	PtpAffx.4085.4.S1_at	At5g65180	hypothetical protein	-	3e-71	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.44	71.9	Ptp.1187.1.A1_s_at	At5g65180	hypothetical protein	-	2e-15	At5g43130	TAF4 (TBP-ASSOCIATED FACTOR 4)	O.I.	H.G.	S.X.
0.44	71.9	PtpAffx.202512.1.S1_at	At5g65180	hypothetical protein	-	1e-74	At2g43160	epsin N-terminal homology (ENTH) domain-containing protein	O.I.	H.G.	S.X.
0.42	68.6	Ptp.6019.2.S1_x_at	At5g65180	hypothetical protein	-	1e-25	At1g62040	ATG8C (autophagy 8c)	O.I.	H.G.	S.X.
0.40	67.0	Ptp.5961.1.S1_a_at	At5g65180	hypothetical protein	-	6e-63	At3g23660	transport protein, putative	O.I.	H.G.	S.X.
0.39	64.6	PtpAffx.120784.1.S1_at	At5g65180	hypothetical protein	-	6e-62	At1g14000	VIK (VH1-INTERACTING KINASE)	O.I.	H.G.	S.X.
0.39	64.6	PtpAffx.7182.1.A1_at	At5g65180	hypothetical protein	-	9e-2	At1g79390	unknown protein	O.I.	H.G.	S.X.
0.37	62.3	PtpAffx.205178.1.S1_s_at	At5g65180	hypothetical protein	-	4e-27	At5g65000	nucleotide-sugar transporter family protein	O.I.	H.G.	S.X.
0.36	61.6	Ptp.3492.1.S1_s_at	At5g65180	hypothetical protein	-	2e-6	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.36	61.6	Ptp.2701.1.S1_at	At5g65180	hypothetical protein	-	7e-9	At5g05760	SYP31 (SYNTAXIN OF PLANTS 31)	O.I.	H.G.	S.X.
0.33	57.5	PtpAffx.152227.1.S1_at	At5g65180	hypothetical protein	-	6e-62	At1g36050	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	PtpAffx.77.2.A1_at	At5g65180	-	-	6e-26	At4g08455	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.
0.30	52.0	PtpAffx.5887.1.S1_a_at	At5g65180	hypothetical protein	-	6e-6	At5g63270	nitrate-responsive NOI protein, putative	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.154446.1.S1_s_at	At5g65180	hypothetical protein	-	3e-23	At2g39270	adenylate kinase family protein	O.I.	H.G.	S.X.
0.17	29.1	PtpAffx.213962.1.S1_x_at	At5g65180	hypothetical protein	-	1e-101	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os04g0401800
Gene name
Homology with Arabidopsis	Similar to At5g65180: - (HF=2e-1)
Module size	7 genes
NF	0.12
%ile	9.4

Co-expression analysis

Gene ID Os04g0401800 Gene name Homology with ArabidopsisSimilar to At5g65180: - (HF=2e-1) Module size 7 genes NF 0.12 %ile 9.4

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0401800

Gene name
Homology with Arabidopsis Similar to At5g65180: - (HF=2e-1)

Module size 7 genes

NF 0.12

%ile 9.4

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays