CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0401800

Gene name
Homology with Arabidopsis Similar to At5g65180: - (HF=2e-1)

Module size 7 genes

NF 0.12

%ile 9.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.91 Os04g0401800 AK103868.1 - DNA repair metallo-beta-lactamase domaincontaining protein 2e-1 At5g65180 - O.I. H.G. S.X.
0.46 60.9 0.92 Os08g0369700 9636.m02793 - HesB/YadR/YfhF family protein 7e-5 At5g03905 hesB-like domain-containing protein O.I. H.G. S.X.
0.12 7.2 0.91 Os01g0144600 AK061501.1 - Hypothetical protein 5e-1 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) O.I. H.G. S.X.
0.09 4.9 0.92 Os07g0673700 AK071934.1 - Cyclin-like F-box domain containing protein 4e+0 At3g43583 unknown protein O.I. H.G. S.X.
0.08 4.2 0.92 Os10g0412000 AK066864.1 - Phospholipid-translocating P-type ATPase, flippasefamily protein 8e-45 At1g59820 ALA3 (Aminophospholipid ATPase3) O.I. H.G. S.X.
0.08 4.2 0.91 Os07g0657500 AK058476.1 - - 3e-2 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) O.I. H.G. S.X.
0.04 2.0 0.93 Os01g0859600 AK072151.1 - Cyclin-like F-box domain containing protein 2e-5 At1g67190 F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.2 99.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g65180, orthologous to the query gene, Os04g0401800

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.63 78.1 At5g65180 836642 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV O.I. H.G. S.X.
0.63 78.1 At1g64960 842804 binding F:binding;P:unknown;C:mitochondrion;MOP O.I. H.G. S.X.
0.54 69.5 At3g23900 821973 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.50 65.3 At3g17450 821009 hAT dimerisation domain-containing protein F:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFB O.I. H.G. S.X.
0.50 65.3 At5g15270 831379 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. H.G. S.X.
0.46 59.8 At5g41580 834160 zinc ion binding F:zinc ion binding;P:unknown;C:unknown;MOFPBVA O.I. H.G. S.X.
0.43 55.3 At4g14920 827150 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. H.G. S.X.
0.38 46.7 At1g24706 839081 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.
0.35 41.6 At4g31200 829247 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein F:RNA binding;P:RNA processing;C:cellular_component unknown;MPFOBVA O.I. H.G. S.X.
0.32 35.7 At4g24500 828552 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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