Co-expression analysis

Gene ID Os04g0400700
Gene name
Homology with ArabidopsisSimilar to At4g23810: WRKY53 (HF=4e-1)
Module size 6 genes
NF 0.37
%ile 43.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.87Os04g04007009632.m03135--4e-1At4g23810WRKY53O.I.H.G.S.X.
0.5068.00.87Os12g02598009640.m01550-Multicopper oxidase, type 1 domain containingprotein2e-1At3g09220LAC7 (laccase 7)O.I.H.G.S.X.
0.5068.00.91Os04g01755009632.m00828-Transferase family protein3e+0At2g27180unknown proteinO.I.H.G.S.X.
0.4051.10.87Os01g02943009629.m01849--2e+0At4g36430peroxidase, putativeO.I.H.G.S.X.
0.3644.00.89Os04g0183300AK100045.1-Amidase family protein1e+0At4g34880amidase family proteinO.I.H.G.S.X.
0.149.30.87Os09g04408509637.m02353--2e+0At5g17510unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.898.8GSM149410Rice Azucena 1ppm Arsenate Rep3GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
15.598.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.798.2GSM154938Root_tZ-treatment_30min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO
10.298.0GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM154833Root_tZ-treatment_30min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO
9.497.9GSM154937Root_tZ-treatment_30min_replicate 2GSE6719Cytokinin responsive genes in riceLink to GEO
8.897.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.397.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM100446Rice Bala 1ppm Arsenate Rep2GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0221GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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