Co-expression analysis

Gene ID Os04g0390700
Gene name
Homology with ArabidopsisSimilar to At5g50700: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e-2)
Module size 8 genes
NF 0.76
%ile 96.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.92Os04g0390700AK107261.1-Short-chain dehydrogenase/reductase SDR familyprotein1e-2At5g50700short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.8896.80.94Os01g0728700AK108000.1-Conserved hypothetical protein3e-2At1g29680unknown proteinO.I.H.G.S.X.
0.8094.60.93Os02g0530600AK102681.1-Poly(ADP-ribose) polymerase, catalytic regiondomain containing protein4e-1At4g32110transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.8094.60.94Os01g0743500AY444338.1-NADP-dependent malic enzyme (EC 1.1.1.40)(NADP-ME)3e-47At5g11670ATNADP-ME2 (NADP-malic enzyme 2)O.I.H.G.S.X.
0.7189.60.95Os04g0434400AK063725.1-Hypothetical protein7e-1At5g42635glycine-rich proteinO.I.H.G.S.X.
0.6787.20.94Os09g0127700AK107885.1-Conserved hypothetical protein1e+0At4g11660AT-HSFB2BO.I.H.G.S.X.
0.6382.70.94Os03g0842900AK107425.1-Short-chain dehydrogenase/reductase SDR familyprotein3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.6382.70.95Os09g0433900AK107237.1-Alanine aminotransferase4e-3At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8496.00.90Os02g0257200AK103494.1-Conserved hypothetical protein2e+0At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.7591.90.92Os05g0576700AK063599.1-Oleosin family protein9e-2At1g22640MYB3 (MYB DOMAIN PROTEIN 3)O.I.H.G.S.X.
0.7088.40.90Os04g0390800AK108276.1-Short-chain dehydrogenase/reductase SDR familyprotein5e-8At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.6787.20.92Os08g0467500AK064041.1-Abscisic acid and stress inducible (A22) gene1e+0At3g26460major latex protein-related / MLP-relatedO.I.H.G.S.X.
0.6483.40.87Os04g0610600AK073109.1-Cor14b protein precursor5e-1At3g25577unknown proteinO.I.H.G.S.X.
0.6382.70.92Os09g0256700AK119936.1-Conserved hypothetical protein3e-1At4g17650aromatic-rich family proteinO.I.H.G.S.X.
0.5676.30.85Os04g0513100AK067841.1-Beta-glucosidase2e-1At4g21760BGLU47 (Beta-glucosidase 47)O.I.H.G.S.X.
0.5676.30.91Os03g0381500AK108125.1-Hypothetical protein4e-1At3g19150KRP6 (KIP-RELATED PROTEIN 6)O.I.H.G.S.X.
0.5573.70.90Os03g0157700AK106245.1-Protein of unknown function DUF639 family protein3e-1At5g23390unknown proteinO.I.H.G.S.X.
0.5573.70.95Os03g0168100AK121575.1-Late embryogenesis abundant protein repeatcontaining protein1e-2At1g12665-O.I.H.G.S.X.
0.5471.90.89Os11g04517009639.m02369-Dehydrin 99e-9At3g50980XERO1 (DEHYDRIN XERO 1)O.I.H.G.S.X.
0.5269.60.87Os03g0747500AK108009.1-Seed maturation protein domain containing protein2e+1At5g19570unknown proteinO.I.H.G.S.X.
0.4863.70.87Os12g05067009640.m03127-VMP3 protein2e-1At3g59600NRPB8BO.I.H.G.S.X.
0.4863.70.91Os10g0548100AK107224.1-Conserved hypothetical protein6e-1At2g11005glycine-rich proteinO.I.H.G.S.X.
0.4762.30.88Os08g02540019636.m01547--1e-2At5g11930glutaredoxin family proteinO.I.H.G.S.X.
0.4762.30.89Os02g0158900AK108324.1-SNF47e-1At1g15330CBS domain-containing proteinO.I.H.G.S.X.
0.4762.30.89Os12g0464400AK121922.1-Short-chain dehydrogenase/reductase SDR familyprotein4e-2At5g50700short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4458.10.86Os05g0373900AK064587.1-Eukaryotic peptide chain release factor subunit 1(eRF1) (Eukaryotic release factor 1)6e-42At1g12920ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)O.I.H.G.S.X.
0.4458.10.92Os03g0159600AK106743.1-Rab28 protein1e+1At3g14200DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4253.90.85Os04g0527900AK108116.1--1e-7At3g26520TIP2 (TONOPLAST INTRINSIC PROTEIN 2)O.I.H.G.S.X.
0.4253.90.85Os07g0657100AK108253.1-Glyoxalase/bleomycin resistanceprotein/dioxygenase domain containing protein2e-12At2g28420lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.4152.40.76Os02g0740500AU165131-Conserved hypothetical protein4e-1At5g24660LSU2 (RESPONSE TO LOW SULFUR 2)O.I.H.G.S.X.
0.4051.10.80Os03g0133100AK063608.1-Hypothetical protein5e+0At3g63020unknown proteinO.I.H.G.S.X.
0.4051.10.85Os02g02506009630.m01427-Late embryogenesis abundant protein repeatcontaining protein1e-2At1g75550glycine-rich proteinO.I.H.G.S.X.
0.3745.00.79Os08g0131200AK063493.1-Plant lipid transfer protein/Par allergen familyprotein3e-1At5g42635glycine-rich proteinO.I.H.G.S.X.
0.3745.00.86Os07g0480900AK063422.1-Cysteine protease (Fragment)8e-7At4g39090RD19 (RESPONSIVE TO DEHYDRATION 19)O.I.H.G.S.X.
0.3644.00.92Os01g03033009629.m01932-Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein5e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.3644.00.93Os03g0305600AK063714.1-Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein2e+0At1g22300GRF10 (GENERAL REGULATORY FACTOR 10)O.I.H.G.S.X.
0.3541.70.74Os08g0473600AK064300.1-Alpha-amylase isozyme 3E precursor (EC 3.2.1.1)(1,4-alpha-D-glucan glucanohydrolase)9e-1Atmg00050-O.I.H.G.S.X.
0.3541.70.84Os04g0266900AK069447.1-Bacterial transketolase family protein4e-19At2g45290transketolase, putativeO.I.H.G.S.X.
0.3541.70.70Os01g0738400AK110661.1-Zinc finger transcription factor8e+0At4g00893-O.I.H.G.S.X.
0.3440.00.83Os01g0950900AK101121.1-Protein of unknown function DUF221 domaincontaining protein2e-2At3g54510early-responsive to dehydration protein-related / ERD protein-relatedO.I.H.G.S.X.
0.3338.80.90Os05g0140800AK110652.1-Glucose/ribitol dehydrogenase family protein7e-1At3g05260short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3338.80.83Os02g0140800AK105278.1-Conserved hypothetical protein1e+0At2g40880ATCYSA (CYSTATIN A)O.I.H.G.S.X.
0.3236.30.72Os01g0911700AK073805.1-Transcription activator VP1-rice9e-8At3g24650ABI3 (ABA INSENSITIVE 3)O.I.H.G.S.X.
0.3236.30.73Os01g0111600AK110620.1-Phosphatidylethanolamine-binding protein familyprotein1e-4At1g18100E12A11O.I.H.G.S.X.
0.3236.30.78Os03g0723400AK107276.1-Conserved hypothetical protein2e+0At4g05070unknown proteinO.I.H.G.S.X.
0.3236.30.90Os03g0277500AK063650.1-Glyoxalase/bleomycin resistanceprotein/dioxygenase domain containing protein2e+1At4g38260unknown proteinO.I.H.G.S.X.
0.3134.50.74Os04g0618400AK108024.1-Hypothetical protein4e+0At5g43480unknown proteinO.I.H.G.S.X.
0.3134.50.88Os05g0569500AF049892.1--6e-10At1g05510-O.I.H.G.S.X.
0.3032.70.79Os10g0177200AK064016.1-Calcium-binding EF-hand domain containing protein8e-1At2g28570unknown proteinO.I.H.G.S.X.
0.3032.70.67Os01g0915200AK121863.1-Cystatin1e+1At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)O.I.H.G.S.X.
0.2931.10.89Os09g0109600AK063582.1-Conserved hypothetical protein1e+0At3g57500unknown proteinO.I.H.G.S.X.
0.2931.10.87Os08g0127900U25968.1-Globulin 1 (Fragment)4e+0At3g55790unknown proteinO.I.H.G.S.X.
0.2831.10.82Os07g0298900AK064565.1-Heavy metal transport/detoxification proteindomain containing protein4e-2At3g48970copper-binding family proteinO.I.H.G.S.X.
0.2727.50.59Os05g0172800AK108688.1-Conserved hypothetical protein7e-1At1g56085-O.I.H.G.S.X.
0.2727.50.65Os09g0369500AK105479.1-Conserved hypothetical protein7e-1At3g06180structural constituent of ribosomeO.I.H.G.S.X.
0.2727.50.84Os05g0474600AK059249.1-Aldose reductase (EC 1.1.1.21) (AR) (Aldehydereductase)4e-17At3g56140unknown proteinO.I.H.G.S.X.
0.2727.50.86Os06g0324400AK063726.1-Late embryogenesis abundant (LEA) group 1 familyprotein1e+0At5g49600unknown proteinO.I.H.G.S.X.
0.2625.60.89Os01g0702500AY333185.1-Dehydrin RAB253e-5At3g50980XERO1 (DEHYDRIN XERO 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.798.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.598.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0006108The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.Link to AmiGO
0.0141GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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