Co-expression analysis

Gene ID Os04g0390700
Gene name
Homology with ArabidopsisSimilar to At5g50700: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e-2)
Module size 8 genes
NF 0.76
%ile 96.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.92Os04g0390700AK107261.1-Short-chain dehydrogenase/reductase SDR familyprotein1e-2At5g50700short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.8896.80.94Os01g0728700AK108000.1-Conserved hypothetical protein3e-2At1g29680unknown proteinO.I.H.G.S.X.
0.8094.60.93Os02g0530600AK102681.1-Poly(ADP-ribose) polymerase, catalytic regiondomain containing protein4e-1At4g32110transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.8094.60.94Os01g0743500AY444338.1-NADP-dependent malic enzyme (EC 1.1.1.40)(NADP-ME)3e-47At5g11670ATNADP-ME2 (NADP-malic enzyme 2)O.I.H.G.S.X.
0.7189.60.95Os04g0434400AK063725.1-Hypothetical protein7e-1At5g42635glycine-rich proteinO.I.H.G.S.X.
0.6787.20.94Os09g0127700AK107885.1-Conserved hypothetical protein1e+0At4g11660AT-HSFB2BO.I.H.G.S.X.
0.6382.70.94Os03g0842900AK107425.1-Short-chain dehydrogenase/reductase SDR familyprotein3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.6382.70.95Os09g0433900AK107237.1-Alanine aminotransferase4e-3At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.798.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.598.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0006108The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.Link to AmiGO
0.0141GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.9555.1.A1_at, orthologous to the query gene, Os04g0390700

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7892.5Zm.9555.1.A1_atAt5g50700--1e-2At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.6785.8Zm.3558.1.A1_atAt5g50700--3e+0At1g68620hydrolaseO.I.H.G.S.X.
0.5166.4Zm.8683.1.A1_atAt5g50700hypothetical protein LOC100273977-4e+0At5g52605-O.I.H.G.S.X.
0.3945.6Zm.5086.1.A1_atAt5g50700hypothetical protein LOC100276795-1e+0At5g08391unknown proteinO.I.H.G.S.X.
0.3641.3Zm.2308.1.A1_atAt5g50700hypothetical protein LOC100276079-2e-2At5g66005Expressed proteinO.I.H.G.S.X.
0.3437.2Zm.5083.1.A1_a_atAt5g50700--3e-22At5g22060ATJ2O.I.H.G.S.X.
0.3336.0Zm.13720.1.S1_atAt5g50700--1e-18At3g18040MPK9 (MAP KINASE 9)O.I.H.G.S.X.
0.3233.4Zm.206.4.A1_x_atAt5g5070040S ribosomal subunit protein S21-4e-16At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.3233.4Zm.13317.1.S1_atAt5g50700hypothetical protein LOC100277679-2e-1At3g55790unknown proteinO.I.H.G.S.X.
0.3131.6Zm.13700.1.S1_atAt5g50700hypothetical protein LOC100193445-5e-1At1g14990unknown proteinO.I.H.G.S.X.
0.3029.8Zm.4036.1.A1_atAt5g50700tyrosine specific protein phosphatase family protein-1e-11At1g05000tyrosine specific protein phosphatase family proteinO.I.H.G.S.X.
0.3029.8Zm.16630.1.A1_atAt5g50700--1e+1At5g60580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2928.1Zm.10095.1.A1_atAt5g50700chloroplast small heat shock protein-2e+0At3g57062unknown proteinO.I.H.G.S.X.
0.2928.1ZmAffx.853.1.S1_atAt5g50700heavy metal-associated domain containing protein-2e-1At3g06130heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2622.7Zm.18268.1.S1_atAt5g50700Hypothetical LOC542182-2e-8At5g45290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2521.3Zm.12954.1.A1_atAt5g50700ADP-ribosylation factor-1e-26At2g18390TTN5 (TITAN 5)O.I.H.G.S.X.
0.2419.8Zm.11667.1.A1_atAt5g50700hypothetical protein LOC100274234-4e-1At4g39630unknown proteinO.I.H.G.S.X.
0.2419.8Zm.17849.1.S1_atAt5g50700hypothetical protein LOC100192672-1e-71At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.2419.8Zm.9194.1.A1_atAt5g50700--1e+0At3g03456unknown proteinO.I.H.G.S.X.
0.2318.6Zm.5229.1.A1_atAt5g50700ATP-dependent transporter ycf16-4e-24At3g10670ATNAP7O.I.H.G.S.X.
0.1811.6Zm.9425.1.A1_a_atAt5g50700hypothetical protein LOC100274829-2e+1At5g23440FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)O.I.H.G.S.X.
0.147.7Zm.10123.1.S1_atAt5g50700heat- and acid-stable phosphoprotein-3e-14At5g46020unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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