Co-expression analysis

Gene ID Os04g0390700
Gene name
Homology with ArabidopsisSimilar to At5g50700: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e-2)
Module size 8 genes
NF 0.76
%ile 96.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.92Os04g0390700AK107261.1-Short-chain dehydrogenase/reductase SDR familyprotein1e-2At5g50700short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.8896.80.94Os01g0728700AK108000.1-Conserved hypothetical protein3e-2At1g29680unknown proteinO.I.H.G.S.X.
0.8094.60.93Os02g0530600AK102681.1-Poly(ADP-ribose) polymerase, catalytic regiondomain containing protein4e-1At4g32110transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.8094.60.94Os01g0743500AY444338.1-NADP-dependent malic enzyme (EC 1.1.1.40)(NADP-ME)3e-47At5g11670ATNADP-ME2 (NADP-malic enzyme 2)O.I.H.G.S.X.
0.7189.60.95Os04g0434400AK063725.1-Hypothetical protein7e-1At5g42635glycine-rich proteinO.I.H.G.S.X.
0.6787.20.94Os09g0127700AK107885.1-Conserved hypothetical protein1e+0At4g11660AT-HSFB2BO.I.H.G.S.X.
0.6382.70.94Os03g0842900AK107425.1-Short-chain dehydrogenase/reductase SDR familyprotein3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.6382.70.95Os09g0433900AK107237.1-Alanine aminotransferase4e-3At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.798.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.598.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0006108The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.Link to AmiGO
0.0141GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig11887_at, orthologous to the query gene, Os04g0390700

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8394.0Contig11887_atAt5g50700--2e-6At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.7790.8Contig12771_atAt5g50700--9e-15At5g10940transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4762.2HVSMEn0020G09f_s_atAt5g50700--9e-1At2g20540pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3849.5Contig9145_atAt5g50700--3e-3At3g24210ankyrin repeat family proteinO.I.H.G.S.X.
0.3138.6HV09C12u_atAt5g50700--4e+0At1g30510ATRFNR2 (ROOT FNR 2)O.I.H.G.S.X.
0.1615.3Contig699_atAt5g50700--1e+0At3g07425unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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