Co-expression analysis

Gene ID Os04g0390700
Gene name
Homology with ArabidopsisSimilar to At5g50700: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e-2)
Module size 8 genes
NF 0.76
%ile 96.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.92Os04g0390700AK107261.1-Short-chain dehydrogenase/reductase SDR familyprotein1e-2At5g50700short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.8896.80.94Os01g0728700AK108000.1-Conserved hypothetical protein3e-2At1g29680unknown proteinO.I.H.G.S.X.
0.8094.60.93Os02g0530600AK102681.1-Poly(ADP-ribose) polymerase, catalytic regiondomain containing protein4e-1At4g32110transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.8094.60.94Os01g0743500AY444338.1-NADP-dependent malic enzyme (EC 1.1.1.40)(NADP-ME)3e-47At5g11670ATNADP-ME2 (NADP-malic enzyme 2)O.I.H.G.S.X.
0.7189.60.95Os04g0434400AK063725.1-Hypothetical protein7e-1At5g42635glycine-rich proteinO.I.H.G.S.X.
0.6787.20.94Os09g0127700AK107885.1-Conserved hypothetical protein1e+0At4g11660AT-HSFB2BO.I.H.G.S.X.
0.6382.70.94Os03g0842900AK107425.1-Short-chain dehydrogenase/reductase SDR familyprotein3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.6382.70.95Os09g0433900AK107237.1-Alanine aminotransferase4e-3At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.798.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.598.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0006108The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.Link to AmiGO
0.0141GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.93410.1.S1_s_at, orthologous to the query gene, Os04g0390700

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.8GmaAffx.93410.1.S1_s_atAt5g50700--3e-1At5g16450dimethylmenaquinone methyltransferase family proteinO.I.H.G.S.X.
0.4665.5Gma.13104.1.S1_atAt5g50700--5e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.3751.7GmaAffx.28102.1.S1_atAt5g50700--1e-50At1g20575dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeO.I.H.G.S.X.
0.3650.8GmaAffx.18356.1.A1_atAt5g50700--5e-15At4g21800QQT2 (quatre-quart2)O.I.H.G.S.X.
0.3548.6Gma.11878.1.S1_atAt5g50700--6e-1At1g75560zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.3447.2GmaAffx.3678.1.S1_atAt5g50700--6e+0At5g46570BSK2 (BR-SIGNALING KINASE 2)O.I.H.G.S.X.
0.3447.2Gma.8094.1.S1_atAt5g50700--4e-123At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.
0.3346.1GmaAffx.15193.1.A1_atAt5g50700--3e-44At1g03140splicing factor Prp18 family proteinO.I.H.G.S.X.
0.3243.7GmaAffx.7205.1.S1_atAt5g50700--9e-23At4g39820bindingO.I.H.G.S.X.
0.3142.2Gma.6145.1.S1_atAt5g50700--2e-4At3g51040RTH (RTE1-HOMOLOG)O.I.H.G.S.X.
0.3040.4Gma.10781.2.A1_a_atAt5g50700--5e-9At3g54190-O.I.H.G.S.X.
0.2939.0Gma.8059.1.S1_atAt5g50700--2e+0At4g40050signal transducerO.I.H.G.S.X.
0.2939.0Gma.2391.1.A1_atAt5g50700--8e-12At3g11530vacuolar protein sorting 55 family protein / VPS55 family proteinO.I.H.G.S.X.
0.2939.0GmaAffx.93491.1.S1_s_atAt5g50700--3e-1At4g38280unknown proteinO.I.H.G.S.X.
0.2839.0Gma.16259.1.S1_atAt5g50700--2e-37At2g43130ARA4O.I.H.G.S.X.
0.2839.0GmaAffx.90871.1.S1_s_atAt5g50700--1e-21At1g36980unknown proteinO.I.H.G.S.X.
0.2839.0Gma.2668.2.A1_atAt5g50700--4e-6At5g42520ATBPC6O.I.H.G.S.X.
0.2839.0GmaAffx.91519.1.S1_s_atAt5g50700--4e-17At1g29850double-stranded DNA-binding family proteinO.I.H.G.S.X.
0.2735.7Gma.10781.1.S1_a_atAt5g50700--7e-29At2g38630-O.I.H.G.S.X.
0.2735.7Gma.8310.1.S1_atAt5g50700--1e-42At2g15240UNC-50 family proteinO.I.H.G.S.X.
0.2735.7GmaAffx.92769.1.S1_atAt5g50700--1e-75At3g19760eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.2633.9Gma.10610.1.S1_atAt5g50700--8e-49At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.2633.9Gma.10691.3.S1_x_atAt5g50700--3e-42At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.
0.2532.6Gma.10927.1.S1_atAt5g50700--2e-7At5g45160root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.
0.2532.6Gma.3754.2.S1_atAt5g50700--4e-16At3g18430calcium-binding EF hand family proteinO.I.H.G.S.X.
0.2329.9GmaAffx.644.1.S1_atAt5g50700--4e-60At2g32980unknown proteinO.I.H.G.S.X.
0.2329.9Gma.1066.1.S1_atAt5g50700--4e-67At3g13670protein kinase family proteinO.I.H.G.S.X.
0.2025.1Gma.6483.1.S1_atAt5g50700--2e-18At4g19003VPS25O.I.H.G.S.X.
0.2025.1Gma.7903.1.A1_atAt5g50700--2e+0At1g13330-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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