CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0350433

Gene name
Homology with Arabidopsis Similar to At2g04690: cellular repressor of E1A-stimulated genes (CREG) family (HF=1e+1)

Module size 22 genes

NF 0.49

%ile 64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 0.98 Os04g0350433 9632.m02668 - - 1e+1 At2g04690 cellular repressor of E1A-stimulated genes (CREG) family O.I. H.G. S.X.
0.74 91.4 0.99 Os05g0203400 9633.m00999 - Conserved hypothetical protein 3e-1 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.67 87.2 0.99 Os11g0122700 9639.m00200 - - 1e+1 At4g29610 cytidine deaminase, putative / cytidine aminohydrolase, putative O.I. H.G. S.X.
0.59 78.0 0.99 Os04g0188200 9632.m00975 - - 4e-1 At5g06270 unknown protein O.I. H.G. S.X.
0.58 77.0 0.99 Os09g0413800 9631.m05442 - - 6e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.56 76.3 0.98 Os03g0219000 9631.m01114 - - 6e+0 At4g14819 unknown protein O.I. H.G. S.X.
0.56 76.3 0.99 Os01g0842100 NM_190550.1 - - 3e+0 At3g05490 RALFL22 (ralf-like 22) O.I. H.G. S.X.
0.55 73.7 0.99 Os04g0211600 9632.m01218 - - 6e-1 At1g48145 unknown protein O.I. H.G. S.X.
0.52 69.6 0.99 Os02g0655000 9639.m04465 - - 2e-1 At3g04640 glycine-rich protein O.I. H.G. S.X.
0.51 68.7 0.99 Os03g0408600 9631.m02871 - - 1e+1 At5g51210 OLEO3 (OLEOSIN3) O.I. H.G. S.X.
0.51 68.7 0.99 Os09g0112900 9637.m00095 - - 4e+0 At2g18830 - O.I. H.G. S.X.
0.50 68.0 0.99 Os10g0351600 9638.m01756 - Tapetum specific protein (Tapetum-specificendoxylanase) 4e-3 At4g38300 glycosyl hydrolase family 10 protein O.I. H.G. S.X.
0.49 64.4 0.99 Os01g0288301 NM_183574.1 - - 3e+0 At5g26720 unknown protein O.I. H.G. S.X.
0.45 58.8 0.99 Os08g0482901 NM_191161.1 - - 1e-1 At3g07120 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.41 52.4 0.98 Os04g0401200 9632.m03140 - - 3e+0 At4g00030 plastid-lipid associated protein PAP / fibrillin family protein O.I. H.G. S.X.
0.40 51.1 0.98 Os04g0556800 9632.m04533 - - 1e-2 At3g24100 - O.I. H.G. S.X.
0.40 51.1 0.99 Os10g0419700 9638.m02403 - - 3e-1 At1g78410 VQ motif-containing protein O.I. H.G. S.X.
0.40 51.1 0.99 Os04g0533700 9632.m04337 - - 2e+0 At3g53880 aldo/keto reductase family protein O.I. H.G. S.X.
0.34 40.0 0.99 Os02g0668700 9638.m03012 - - 5e+0 At5g51720 unknown protein O.I. H.G. S.X.
0.33 38.8 0.98 Os02g0477600 9630.m02624 - - 8e-1 At5g05090 myb family transcription factor O.I. H.G. S.X.
0.33 38.8 0.99 Os06g0545100 9634.m03339 - - 4e+0 At1g14225 unknown protein O.I. H.G. S.X.
0.30 32.7 0.99 Os09g0484700 9637.m02754 - - 1e+0 At5g16950 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.75	91.9	0.98	Os04g0350433	9632.m02668	-	-	1e+1	At2g04690	cellular repressor of E1A-stimulated genes (CREG) family	O.I.	H.G.	S.X.
0.74	91.4	0.99	Os05g0203400	9633.m00999	-	Conserved hypothetical protein	3e-1	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.
0.67	87.2	0.99	Os11g0122700	9639.m00200	-	-	1e+1	At4g29610	cytidine deaminase, putative / cytidine aminohydrolase, putative	O.I.	H.G.	S.X.
0.59	78.0	0.99	Os04g0188200	9632.m00975	-	-	4e-1	At5g06270	unknown protein	O.I.	H.G.	S.X.
0.58	77.0	0.99	Os09g0413800	9631.m05442	-	-	6e+0	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os03g0219000	9631.m01114	-	-	6e+0	At4g14819	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.99	Os01g0842100	NM_190550.1	-	-	3e+0	At3g05490	RALFL22 (ralf-like 22)	O.I.	H.G.	S.X.
0.55	73.7	0.99	Os04g0211600	9632.m01218	-	-	6e-1	At1g48145	unknown protein	O.I.	H.G.	S.X.
0.52	69.6	0.99	Os02g0655000	9639.m04465	-	-	2e-1	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.
0.51	68.7	0.99	Os03g0408600	9631.m02871	-	-	1e+1	At5g51210	OLEO3 (OLEOSIN3)	O.I.	H.G.	S.X.
0.51	68.7	0.99	Os09g0112900	9637.m00095	-	-	4e+0	At2g18830	-	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os10g0351600	9638.m01756	-	Tapetum specific protein (Tapetum-specificendoxylanase)	4e-3	At4g38300	glycosyl hydrolase family 10 protein	O.I.	H.G.	S.X.
0.49	64.4	0.99	Os01g0288301	NM_183574.1	-	-	3e+0	At5g26720	unknown protein	O.I.	H.G.	S.X.
0.45	58.8	0.99	Os08g0482901	NM_191161.1	-	-	1e-1	At3g07120	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os04g0401200	9632.m03140	-	-	3e+0	At4g00030	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os04g0556800	9632.m04533	-	-	1e-2	At3g24100	-	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os10g0419700	9638.m02403	-	-	3e-1	At1g78410	VQ motif-containing protein	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os04g0533700	9632.m04337	-	-	2e+0	At3g53880	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os02g0668700	9638.m03012	-	-	5e+0	At5g51720	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os02g0477600	9630.m02624	-	-	8e-1	At5g05090	myb family transcription factor	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os06g0545100	9634.m03339	-	-	4e+0	At1g14225	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os09g0484700	9637.m02754	-	-	1e+0	At5g16950	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.1 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.4 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.7 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
35.1	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
31.4	99.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.7	98.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.5	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.049 1 GO:0009225 The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.049	1	GO:0009225	The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os04g0350433
Gene name
Homology with Arabidopsis	Similar to At2g04690: cellular repressor of E1A-stimulated genes (CREG) family (HF=1e+1)
Module size	22 genes
NF	0.49
%ile	64.3

Co-expression analysis

Gene ID Os04g0350433 Gene name Homology with ArabidopsisSimilar to At2g04690: cellular repressor of E1A-stimulated genes (CREG) family (HF=1e+1) Module size 22 genes NF 0.49 %ile 64.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0491GO:0009225The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0350433

Gene name
Homology with Arabidopsis Similar to At2g04690: cellular repressor of E1A-stimulated genes (CREG) family (HF=1e+1)

Module size 22 genes

NF 0.49

%ile 64.3

SF Genes GO ID Process Name Link to AmiGO
0.049 1 GO:0009225 The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays