CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0350000

Gene name
Homology with Arabidopsis Similar to At1g62680: - (HF=3e-2)

Module size 9 genes

NF 0.31

%ile 33.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.90 Os04g0350000 AK063387.1 - TPR-like domain containing protein 3e-2 At1g62680 - O.I. H.G. S.X.
0.42 53.9 0.90 Os08g0355500 AK106035.1 - Conserved hypothetical protein 5e-1 At5g23840 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein O.I. H.G. S.X.
0.41 52.4 0.90 Os07g0228600 AK067554.1 - - 2e+0 At3g51510 unknown protein O.I. H.G. S.X.
0.38 46.9 0.91 Os03g0754200 AK103031.1 - The start codon is not identified. 1e+0 At5g20110 dynein light chain, putative O.I. H.G. S.X.
0.36 44.0 0.94 Os01g0502800 AK059957.1 - - 2e-1 At5g53720 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.31 34.5 0.93 Os03g0572300 AK061375.1 - Modifier of rudimentary (Mod family protein 6e-4 At2g36680 - O.I. H.G. S.X.
0.26 25.6 0.93 Os07g0472200 AK061509.1 - Zn-finger, LSD1 type domain containing protein 3e+0 At4g14830 unknown protein O.I. H.G. S.X.
0.22 19.4 0.93 Os06g0720500 AK120098.1 - Homeobox leucine-zipper protein 6e-7 At1g52150 ATHB-15 O.I. H.G. S.X.
0.11 6.5 0.90 Os03g0608800 AK071245.1 - Peptidase, trypsin-like serine and cysteineproteases domain containing protein 4e+0 At4g00780 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.1 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.3 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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