CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0349600

Gene name
Homology with Arabidopsis Similar to At3g19160: ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) (HF=2e-2)

Module size 6 genes

NF 0.28

%ile 28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 0.94 Os04g0349600 AK070947.1 - TPR-like domain containing protein 2e-2 At3g19160 ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) O.I. H.G. S.X.
0.55 73.7 0.94 Os03g0593200 9631.m03811 - Protein of unknown function DUF21 domaincontaining protein 4e-46 At1g55930 CBS domain-containing protein / transporter associated domain-containing protein O.I. H.G. S.X.
0.50 68.0 0.95 Os01g0104600 AK100613.1 - Light-mediated development protein DET1(Deetiolated1) 7e-5 At4g10180 DET1 (DE-ETIOLATED 1) O.I. H.G. S.X.
0.47 62.3 0.95 Os08g0215200 AK072536.1 - En/Spm-like transposon proteins family protein 1e-1 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.
0.44 58.1 0.95 Os04g0466100 AK064543.1 - Cell division protein FtsH-like protein 3e-7 At3g02450 cell division protein ftsH, putative O.I. H.G. S.X.
0.08 4.2 0.95 Os01g0613900 AK119181.1 - Protein of unknown function UPF0052 and CofDfamily protein 1e-15 At2g34090 MEE18 (maternal effect embryo arrest 18) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.1 99.1 GSM304669 Control for the stable mutant rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
11.0 98.2 GSM304664 Control for the stable mutant rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
10.7 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.8 97.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.3 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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