CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0348200

Gene name
Homology with Arabidopsis Similar to At5g35300: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.48

%ile 62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.99 Os04g0348200 9632.m02648 - - 2e+0 At5g35300 unknown protein O.I. H.G. S.X.
0.59 78.0 0.99 Os07g0453300 9635.m02607 - - 3e+0 At1g67980 CCoAMT O.I. H.G. S.X.
0.53 71.3 0.99 Os05g0527600 9633.m04222 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 7e-4 At1g73880 UGT89B1 (UDP-GLUCOSYL TRANSFERASE 89B1) O.I. H.G. S.X.
0.46 60.9 0.99 Os07g0226700 9635.m01218 - - 1e+0 At3g15750 unknown protein O.I. H.G. S.X.
0.43 55.4 0.99 Os01g0521300 NM_193661.1 - Hypothetical protein 3e+0 At1g33710 - O.I. H.G. S.X.
0.30 32.7 0.99 Os01g0283400 AK119993.1 - Conserved hypothetical protein 3e-1 At5g06480 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.9 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.8 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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