CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0332900

Gene name
Homology with Arabidopsis Similar to At5g17150: - (HF=3e+0)

Module size 6 genes

NF 0.62

%ile 84.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os04g0332900 9632.m02496 - - 3e+0 At5g17150 - O.I. H.G. S.X.
0.63 82.7 0.97 Os02g0165300 9630.m00631 - - 9e-6 At4g18400 unknown protein O.I. H.G. S.X.
0.57 77.0 0.98 Os01g0528900 9629.m03236 - - 4e+0 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.50 68.0 0.97 Os09g0343100 9637.m01473 - Conserved hypothetical protein 2e+0 At5g18060 auxin-responsive protein, putative O.I. H.G. S.X.
0.50 68.0 0.97 Os04g0366500 9632.m02816 - - 1e+1 At3g51060 STY1 (STYLISH 1) O.I. H.G. S.X.
0.44 58.1 0.99 Os08g0426200 9636.m03305 - - 2e+0 At3g17580 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
82.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
48.1 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.3 99.7 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
23.2 99.3 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
18.2 98.9 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
15.8 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.15818.1.S1_at, orthologous to the query gene, Os04g0332900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 Zm.15818.1.S1_at At5g17150 ferredoxin5 - 8e-2 At1g10960 ATFD1 (FERREDOXIN 1) O.I. H.G. S.X.
0.55 71.6 Zm.13265.1.S1_at At5g17150 - - 1e-3 At1g12240 ATBETAFRUCT4 O.I. H.G. S.X.
0.40 48.5 Zm.10793.1.A1_at At5g17150 - - 5e-9 At4g04770 ATABC1 (ATP BINDING CASSETTE PROTEIN 1) O.I. H.G. S.X.
0.35 38.9 Zm.5646.2.A1_x_at At5g17150 hypothetical protein LOC100191650 - 3e-41 At1g04750 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) O.I. H.G. S.X.
0.33 36.0 Zm.17181.1.S1_at At5g17150 - - 7e-17 At1g64660 ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE) O.I. H.G. S.X.
0.31 31.6 Zm.8729.1.A1_at At5g17150 hypothetical protein LOC100277693 - 2e-2 At3g42310 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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