CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0304400

Gene name
Homology with Arabidopsis Similar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=6e-7)

Module size 7 genes

NF 0.37

%ile 42.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.81 Os04g0304400 AK102927.1 - MADS-box protein AGL16-II 6e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.73 91.1 0.88 Os11g0708100 AK060544.1 - Laccase (EC 1.10.3.2) (Fragment) 1e-8 At5g01190 LAC10 (laccase 10) O.I. H.G. S.X.
0.47 62.3 0.86 Os10g0165300 NM_195010.1 - Cytochrome P450 family protein 1e-2 At2g45580 CYP76C3 O.I. H.G. S.X.
0.39 48.3 0.83 Os11g0126800 AK059453.1 - Hypothetical protein 9e-2 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.
0.27 27.5 0.85 Os01g0680200 AK121881.1 - - 2e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.26 25.6 0.85 Os01g0740500 9629.m05236 - Transferrin receptor-like dimerisation regiondomain containing protein 2e-5 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) O.I. H.G. S.X.
0.20 16.5 0.86 Os02g0758800 AK071537.1 - Plastocyanin-like domain containing protein 5e-4 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.8 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.8 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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