Co-expression analysis

Gene ID Os04g0303500
Gene name
Homology with ArabidopsisSimilar to At5g59000: zinc finger (C3HC4-type RING finger) family protein (HF=5e-3)
Module size 43 genes
NF 0.44
%ile 56.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.98100.00.99Os04g03035009632.m02208-Protein kinase domain containing protein5e-3At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6079.70.99Os10g04661009638.m02863-Conserved hypothetical protein4e+0At5g4643060S ribosomal protein L32 (RPL32B)O.I.H.G.S.X.
0.5978.00.99Os07g05839009635.m03939--3e+0At3g54830amino acid transporter family proteinO.I.H.G.S.X.
0.5676.30.99Os11g0655100AK063746.1-Hypothetical protein9e-1At5g49350unknown proteinO.I.H.G.S.X.
0.5471.90.99Os04g06913009632.m05815--1e-1At1g33280ANAC015 (Arabidopsis NAC domain containing protein 15)O.I.H.G.S.X.
0.5371.30.99Os06g01312009634.m00318--1e+1At5g53592-O.I.H.G.S.X.
0.5371.30.99Os02g02112009630.m00079-Protein kinase domain containing protein7e+0At5g39390leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.5269.61.00Os05g03957009633.m03019--2e+0At4g31920ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10)O.I.H.G.S.X.
0.5269.60.99Os01g0501100NM_196452.1--8e+0At4g39540shikimate kinase family proteinO.I.H.G.S.X.
0.5168.71.00Os01g02950009633.m03469--3e-1At2g41130basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5168.71.00Os06g05656009639.m01196--5e-1At5g57685AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)O.I.H.G.S.X.
0.5168.70.99Os09g01051009637.m00016--1e+0At2g43230serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.5068.00.99Os11g04700009639.m02529--5e+0At5g07250ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)O.I.H.G.S.X.
0.5068.00.99Os05g01912009633.m00892--5e+0At5g17795unknown proteinO.I.H.G.S.X.
0.5068.00.99Os12g04348009637.m01140--6e-1At4g03160-O.I.H.G.S.X.
0.4964.41.00Os06g05028009632.m02370-Hypothetical plant protein family protein6e-2At3g57320unknown proteinO.I.H.G.S.X.
0.4863.70.99Os05g03522009634.m04936--1e+1At5g52960unknown proteinO.I.H.G.S.X.
0.4863.70.99Os04g03168009632.m02349-FAR1 domain containing protein2e+0At1g04190tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.4762.30.99Os07g0238400NM_186745.1--4e+0Atmg00740-O.I.H.G.S.X.
0.4762.30.99Os08g0435800AK121712.1-Lipoate protein ligase-like protein1e+0At3g07260forkhead-associated domain-containing protein / FHA domain-containing proteinO.I.H.G.S.X.
0.4762.30.99Os05g03269009633.m02351--4e-1At2g22440-O.I.H.G.S.X.
0.4762.31.00Os02g06049009630.m03775--4e-1At1g14455unknown proteinO.I.H.G.S.X.
0.4762.30.99Os04g02467009632.m01564--2e-1At1g47410unknown proteinO.I.H.G.S.X.
0.4660.90.99Os10g0495200AK102771.1-Fertility restorer3e-1At4g35710unknown proteinO.I.H.G.S.X.
0.4458.10.99Os12g04188009640.m02183--2e+0At3g22300RPS10 (RIBOSOMAL PROTEIN S10)O.I.H.G.S.X.
0.4253.90.99Os01g0149300NM_184369.1--2e+0At3g25720-O.I.H.G.S.X.
0.4253.91.00Os08g02997009636.m02019--2e+0At4g02890UBQ14O.I.H.G.S.X.
0.4253.90.99Os08g02602009636.m01608--6e-1At4g19820glycosyl hydrolase family 18 proteinO.I.H.G.S.X.
0.4152.40.99Os12g04122009640.m02115--3e-1At3g57670NTT (NO TRANSMITTING TRACT)O.I.H.G.S.X.
0.4152.40.99Os02g02887009630.m01771-ABC transporter related domain containing protein9e-15At3g13100ATMRP7O.I.H.G.S.X.
0.3948.31.00Os01g0209333NM_184218.1--5e-1At1g72240unknown proteinO.I.H.G.S.X.
0.3846.90.99Os07g01406009635.m00407--2e+0At1g11840ATGLX1 (GLYOXALASE I HOMOLOG)O.I.H.G.S.X.
0.3846.90.99Os11g05344009639.m03000--3e+0At4g01935unknown proteinO.I.H.G.S.X.
0.3846.91.00Os05g0232800NM_193898.1-HAT dimerisation domain containing protein9e-2At5g61500ATG3O.I.H.G.S.X.
0.3745.00.99Os04g0336600AK109756.1-Peptidase A1, pepsin family protein4e-3At3g02740aspartyl protease family proteinO.I.H.G.S.X.
0.3541.70.99Os07g06712009635.m04785-TPR-like domain containing protein2e-1At2g22070pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3338.80.99Os02g06147009630.m03872-SPla/RYanodine receptor SPRY domain containingprotein1e+0At5g62500ATEB1B (END BINDING PROTEIN 1B)O.I.H.G.S.X.
0.3338.80.99Os02g06575009637.m02348--4e-1At4g18580unknown proteinO.I.H.G.S.X.
0.3338.80.99Os04g06515009632.m05428-Protein kinase domain containing protein3e-4At4g31110kinaseO.I.H.G.S.X.
0.3236.30.99Os01g0547400NM_193359.1-Homeodomain-like containing protein2e-1At3g23637DVL21 (DEVIL 21)O.I.H.G.S.X.
0.3032.70.99Os04g03001509632.m02168--3e+0At3g49180RID3 (ROOT INITIATION DEFECTIVE 3)O.I.H.G.S.X.
0.2831.10.99Os12g0589500NM_188082.1--2e+0At3g59800unknown proteinO.I.H.G.S.X.
0.2625.60.99Os10g0551400NM_197668.1-Retrotransposon gag protein family protein2e+0At3g49290ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.499.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
21.999.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.398.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.398.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.698.2GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.598.1GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0421GO:0000272The chemical reactions and pathways resulting in the breakdown of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages.Link to AmiGO
0.0211GO:0000160A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.Link to AmiGO
0.0211GO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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