CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0302400

Gene name
Homology with Arabidopsis Similar to At3g44950: glycine-rich protein (HF=6e-2)

Module size 20 genes

NF 0.74

%ile 95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.87 96.6 0.96 Os04g0302400 AK069467.1 - Conserved hypothetical protein 6e-2 At3g44950 glycine-rich protein O.I. H.G. S.X.
0.95 99.6 0.98 Os11g0501300 9639.m02775 - - 4e-1 At1g65541 unknown protein O.I. H.G. S.X.
0.83 95.8 0.97 Os09g0349800 9637.m01547 - Protein kinase domain containing protein 1e+0 At5g66710 protein kinase, putative O.I. H.G. S.X.
0.82 95.0 0.98 Os06g0323600 9634.m02142 - - 2e-1 At2g18500 OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7) O.I. H.G. S.X.
0.82 95.0 0.98 Os08g0450500 9636.m03506 - - 2e+0 At5g02650 unknown protein O.I. H.G. S.X.
0.82 95.0 0.98 Os08g0362850 9636.m02719 - - 2e+0 At3g14670 unknown protein O.I. H.G. S.X.
0.80 94.6 0.98 Os05g0123000 9633.m00237 - LOB domain protein 1 9e-4 At1g31320 LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) O.I. H.G. S.X.
0.78 93.4 0.97 Os07g0567500 NM_186364.1 - Conserved hypothetical protein 2e+0 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.77 93.1 0.98 Os09g0319800 AK066759.1 - Terpenoid cylases/protein prenyltransferasealpha-alpha toroid domain containing protein 6e-1 At4g19910 Toll-Interleukin-Resistance (TIR) domain-containing protein O.I. H.G. S.X.
0.76 92.2 0.97 Os10g0334800 9638.m01577 - - 3e+1 At5g35230 unknown protein O.I. H.G. S.X.
0.73 91.1 0.97 Os07g0285800 NM_185302.1 - - 7e-1 At3g15540 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) O.I. H.G. S.X.
0.72 89.8 0.97 Os12g0533000 9640.m03363 - - 7e+0 At3g22950 ATARFC1 (ADP-ribosylation factor C1) O.I. H.G. S.X.
0.68 87.5 0.97 Os10g0124600 9638.m00268 - - 4e-1 At1g43900 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.67 87.2 0.98 Os09g0259200 9637.m00620 - Hypothetical protein 7e-3 At2g22320 unknown protein O.I. H.G. S.X.
0.66 83.9 0.97 Os01g0879600 9629.m06520 - - 4e-1 At5g60140 transcriptional factor B3 family protein O.I. H.G. S.X.
0.64 83.4 0.97 Os08g0349800 9636.m02622 - - 4e+0 At2g39060 nodulin MtN3 family protein O.I. H.G. S.X.
0.63 82.7 0.97 Os12g0549400 9640.m03518 - - 2e-2 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) O.I. H.G. S.X.
0.62 81.5 0.97 Os10g0365900 9638.m01861 - - 6e+0 At3g20070 TTN9 (TITAN9) O.I. H.G. S.X.
0.60 79.7 0.98 Os08g0262800 9636.m01637 - - 7e-2 At5g07110 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) O.I. H.G. S.X.
0.56 76.3 0.97 Os03g0610200 9631.m03978 - - 4e-1 At2g36030 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.87	96.6	0.96	Os04g0302400	AK069467.1	-	Conserved hypothetical protein	6e-2	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.
0.95	99.6	0.98	Os11g0501300	9639.m02775	-	-	4e-1	At1g65541	unknown protein	O.I.	H.G.	S.X.
0.83	95.8	0.97	Os09g0349800	9637.m01547	-	Protein kinase domain containing protein	1e+0	At5g66710	protein kinase, putative	O.I.	H.G.	S.X.
0.82	95.0	0.98	Os06g0323600	9634.m02142	-	-	2e-1	At2g18500	OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7)	O.I.	H.G.	S.X.
0.82	95.0	0.98	Os08g0450500	9636.m03506	-	-	2e+0	At5g02650	unknown protein	O.I.	H.G.	S.X.
0.82	95.0	0.98	Os08g0362850	9636.m02719	-	-	2e+0	At3g14670	unknown protein	O.I.	H.G.	S.X.
0.80	94.6	0.98	Os05g0123000	9633.m00237	-	LOB domain protein 1	9e-4	At1g31320	LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.
0.78	93.4	0.97	Os07g0567500	NM_186364.1	-	Conserved hypothetical protein	2e+0	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.
0.77	93.1	0.98	Os09g0319800	AK066759.1	-	Terpenoid cylases/protein prenyltransferasealpha-alpha toroid domain containing protein	6e-1	At4g19910	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.
0.76	92.2	0.97	Os10g0334800	9638.m01577	-	-	3e+1	At5g35230	unknown protein	O.I.	H.G.	S.X.
0.73	91.1	0.97	Os07g0285800	NM_185302.1	-	-	7e-1	At3g15540	IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)	O.I.	H.G.	S.X.
0.72	89.8	0.97	Os12g0533000	9640.m03363	-	-	7e+0	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	O.I.	H.G.	S.X.
0.68	87.5	0.97	Os10g0124600	9638.m00268	-	-	4e-1	At1g43900	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os09g0259200	9637.m00620	-	Hypothetical protein	7e-3	At2g22320	unknown protein	O.I.	H.G.	S.X.
0.66	83.9	0.97	Os01g0879600	9629.m06520	-	-	4e-1	At5g60140	transcriptional factor B3 family protein	O.I.	H.G.	S.X.
0.64	83.4	0.97	Os08g0349800	9636.m02622	-	-	4e+0	At2g39060	nodulin MtN3 family protein	O.I.	H.G.	S.X.
0.63	82.7	0.97	Os12g0549400	9640.m03518	-	-	2e-2	At3g18070	BGLU43 (BETA GLUCOSIDASE 43)	O.I.	H.G.	S.X.
0.62	81.5	0.97	Os10g0365900	9638.m01861	-	-	6e+0	At3g20070	TTN9 (TITAN9)	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os08g0262800	9636.m01637	-	-	7e-2	At5g07110	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	O.I.	H.G.	S.X.
0.56	76.3	0.97	Os03g0610200	9631.m03978	-	-	4e-1	At2g36030	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.3 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.4 99.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
10.6 98.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.1 98.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.6 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
34.3	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
19.4	99.0	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
10.6	98.1	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.1	98.0	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.6	97.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3	97.7	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.048 1 GO:0009620 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.048	1	GO:0009620	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os04g0302400
Gene name
Homology with Arabidopsis	Similar to At3g44950: glycine-rich protein (HF=6e-2)
Module size	20 genes
NF	0.74
%ile	95.6

Co-expression analysis

Gene ID Os04g0302400 Gene name Homology with ArabidopsisSimilar to At3g44950: glycine-rich protein (HF=6e-2) Module size 20 genes NF 0.74 %ile 95.6

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0481GO:0009620A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0302400

Gene name
Homology with Arabidopsis Similar to At3g44950: glycine-rich protein (HF=6e-2)

Module size 20 genes

NF 0.74

%ile 95.6

SF Genes GO ID Process Name Link to AmiGO
0.048 1 GO:0009620 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays