CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0301700

Gene name
Homology with Arabidopsis Similar to At1g71070: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (HF=3e-3)

Module size 11 genes

NF 0.20

%ile 17.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 0.87 Os04g0301700 9632.m02190 - Glycosyl transferase, family 14 protein 3e-3 At1g71070 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.35 41.7 0.89 Os03g0778000 AK110772.1 - Conserved hypothetical protein 1e+1 At5g17210 unknown protein O.I. H.G. S.X.
0.32 36.3 0.89 Os04g0417800 AK067483.1 - Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein 2e-5 At3g15470 WD-40 repeat family protein O.I. H.G. S.X.
0.32 36.3 0.90 Os02g0614500 AK069766.1 - Conserved hypothetical protein 1e-16 At4g09810 transporter-related O.I. H.G. S.X.
0.31 34.5 0.91 Os05g0367400 AK108439.1 - - 2e+0 At3g06490 MYB108 (myb domain protein 108) O.I. H.G. S.X.
0.29 31.1 0.90 Os06g0502900 AK103578.1 - Hypothetical protein 2e-11 At3g07790 DGCR14-related O.I. H.G. S.X.
0.28 31.1 0.89 Os06g0283300 9634.m01742 - Serine/threonine protein kinase family protein 1e-4 At5g15730 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.21 17.9 0.91 Os01g0695200 AK064145.1 - Conserved hypothetical protein 9e-7 At5g14550 unknown protein O.I. H.G. S.X.
0.20 16.5 0.91 Os01g0919500 AK059108.1 - Zn-finger, RING domain containing protein 2e+0 At2g01260 unknown protein O.I. H.G. S.X.
0.15 10.3 0.90 Os06g0207700 9634.m01032 - Ion transport protein family protein 4e-7 At3g17690 ATCNGC19 O.I. H.G. S.X.
0.06 3.0 0.90 Os01g0752100 NM_191251.1 - Cyclin-like F-box domain containing protein 7e-1 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.1 99.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.143 1 GO:0006772 The chemical reactions and pathways involving thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
0.143 1 GO:0009229 The chemical reactions and pathways resulting in the formation of thiamin diphosphate, a derivative of thiamin (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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