Co-expression analysis

Gene ID Os04g0257500
Gene name
Homology with ArabidopsisSimilar to At1g06160: ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) (HF=7e-3)
Module size 6 genes
NF 0.82
%ile 98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.98Os04g0257500AK107745.1-Ethylene-responsive element binding protein7e-3At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.
0.9198.90.99Os04g02325009632.m01461--1e+0At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.8395.80.98Os03g0162300AK110675.1-Hypothetical protein4e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.7189.60.98Os12g05117009640.m03180--1e-1At3g03030F-box family proteinO.I.H.G.S.X.
0.6787.20.98Os08g03031009636.m02060--5e-2At5g66230unknown proteinO.I.H.G.S.X.
0.6382.70.98Os01g0288100NM_183572.1--1e-1At1g07175unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.20.98Os02g01009009630.m00009--5e-2At2g42410ZFP11 (ZINC FINGER PROTEIN 11)O.I.H.G.S.X.
0.6787.20.98Os04g02830009632.m01972--2e+0At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)O.I.H.G.S.X.
0.6181.20.98Os08g04184009636.m03229--7e-4At1g30475-O.I.H.G.S.X.
0.5676.30.97Os03g07934009631.m05691--2e+0At5g55570unknown proteinO.I.H.G.S.X.
0.5068.00.96Os12g02227009640.m01156--8e+0At3g08636unknown proteinO.I.H.G.S.X.
0.5068.00.98Os03g06920009631.m04726-Glycosyl transferase, family 14 protein7e-4At5g15050glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinO.I.H.G.S.X.
0.5068.00.98Os10g03439509638.m01678--6e+0At3g16660unknown proteinO.I.H.G.S.X.
0.5068.00.98Os10g04582009638.m02775--1e+0At4g30370zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5068.00.99Os11g01872009639.m00790--2e-1At2g23320WRKY15O.I.H.G.S.X.
0.4660.90.96Os06g0324800AK109109.1-Major facilitator superfamily protein6e-1At2g30560glycine-rich proteinO.I.H.G.S.X.
0.4458.10.96Os07g0533600AK109794.1-Peptidase A1, pepsin family protein2e-1At1g01300aspartyl protease family proteinO.I.H.G.S.X.
0.4355.40.98Os06g0706000AK070685.1-Hypothetical protein4e-1At2g02040PTR2 (PEPTIDE TRANSPORTER 2)O.I.H.G.S.X.
0.4051.10.98Os01g0756800NM_191290.1--1e+1At5g02280synbindin, putativeO.I.H.G.S.X.
0.4051.10.98Os04g01230009632.m00230--3e-1At1g35420dienelactone hydrolase family proteinO.I.H.G.S.X.
0.4051.10.98Os04g01314009632.m00329--8e-1At5g64810WRKY51O.I.H.G.S.X.
0.4051.10.98Os12g01476509640.m00443--5e+0At4g27740-O.I.H.G.S.X.
0.4051.10.98Os01g0278100AK105195.1-Conserved hypothetical protein6e-1At5g28800unknown proteinO.I.H.G.S.X.
0.4051.10.98Os02g06614009630.m04282--3e-1At5g61230ankyrin repeat family proteinO.I.H.G.S.X.
0.3846.90.97Os12g04291009640.m02299--1e+1At4g00220JLO (JAGGED LATERAL ORGANS)O.I.H.G.S.X.
0.3846.90.98Os11g06877009639.m04295--3e+0At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.3541.70.95Os08g04602009636.m03597--4e-1At3g43950phosphotransferase, alcohol group as acceptorO.I.H.G.S.X.
0.3440.00.96Os06g0589900AK062501.1-Conserved hypothetical protein3e-4At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.
0.3338.80.97Os01g0148600NM_184365.1--2e+0At4g39260GR-RBP8O.I.H.G.S.X.
0.3236.30.97Os11g02605509639.m01428--7e-1At4g25130peptide methionine sulfoxide reductase, putativeO.I.H.G.S.X.
0.3236.30.98Os10g01378009638.m00394--3e-1At3g60530zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.3134.50.95Os04g04841009632.m03877--2e+0At5g12870MYB46 (MYB DOMAIN PROTEIN 46)O.I.H.G.S.X.
0.3032.70.97Os12g02187009640.m01113--4e+0At2g12900DNA binding / transcription factorO.I.H.G.S.X.
0.2727.50.97Os06g02800009634.m01691--1e+0At5g18748unknown proteinO.I.H.G.S.X.
0.2625.60.93Os05g03822009633.m02899-Na+/H+ exchangeing protein-like2e-1At4g23700ATCHX17 (CATION/H+ EXCHANGER 17)O.I.H.G.S.X.
0.2524.10.95Os12g04949009640.m03004--9e+0At4g37550formamidase, putative / formamide amidohydrolase, putativeO.I.H.G.S.X.
0.2524.10.96Os03g0438900AK111048.1-Hypothetical protein7e+0At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.
0.2524.10.98Os04g04389009632.m03451--3e-1At5g51812unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
99.0100.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
16.998.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.498.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.998.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.098.6GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.698.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.298.5GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.598.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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