Co-expression analysis

Gene ID Os04g0257500
Gene name
Homology with ArabidopsisSimilar to At1g06160: ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) (HF=7e-3)
Module size 6 genes
NF 0.82
%ile 98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.98Os04g0257500AK107745.1-Ethylene-responsive element binding protein7e-3At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.
0.9198.90.99Os04g02325009632.m01461--1e+0At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.8395.80.98Os03g0162300AK110675.1-Hypothetical protein4e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.7189.60.98Os12g05117009640.m03180--1e-1At3g03030F-box family proteinO.I.H.G.S.X.
0.6787.20.98Os08g03031009636.m02060--5e-2At5g66230unknown proteinO.I.H.G.S.X.
0.6382.70.98Os01g0288100NM_183572.1--1e-1At1g07175unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
99.0100.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
16.998.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.498.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.998.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.098.6GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.698.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.298.5GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.598.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.17956.1.A1_at, orthologous to the query gene, Os04g0257500

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8796.4Zm.17956.1.A1_atAt1g06160--2e+0At3g20570plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.5976.1Zm.5792.2.A1_atAt1g06160--1e+0At4g39990RABA4B (RAB GTPASE HOMOLOG A4B)O.I.H.G.S.X.
0.5571.6Zm.1685.1.A1_atAt1g06160hypothetical protein LOC100192950-6e-3At3g18060transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.5267.3Zm.2321.6.A1_atAt1g06160hypothetical protein LOC100277354-3e-3At3g28970AAR3 (antiauxin-resistant 3)O.I.H.G.S.X.
0.5166.4Zm.8336.1.S1_x_atAt1g06160NAS1 protein-4e+0At2g44360unknown proteinO.I.H.G.S.X.
0.5065.7Zm.10790.1.S1_atAt1g06160glutamyl-tRNA reductase1 /// hypothetical protein LOC100191548-4e-6At1g58290HEMA1O.I.H.G.S.X.
0.5065.7Zm.11977.1.A1_atAt1g06160--2e+1At5g20650COPT5O.I.H.G.S.X.
0.5065.7Zm.13744.1.S1_atAt1g06160guanine nucleotide-binding protein alpha-1 subunit-2e-14At2g26300GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)O.I.H.G.S.X.
0.5065.7Zm.245.1.S1_atAt1g06160glutathione transferase6-2e-1At1g27130ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)O.I.H.G.S.X.
0.4961.9Zm.3775.1.A1_atAt1g06160chaperonin-3e-5At1g14980CPN10 (CHAPERONIN 10)O.I.H.G.S.X.
0.4352.8Zm.19160.1.S1_atAt1g06160thioredoxin-like protein 1-6e-7At3g04780-O.I.H.G.S.X.
0.4352.8Zm.19241.1.A1_atAt1g06160WW domain-containing oxidoreductase-6e+0At4g22160unknown proteinO.I.H.G.S.X.
0.4149.7Zm.2330.1.S1_atAt1g06160--4e-15At2g42120POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)O.I.H.G.S.X.
0.3945.6Zm.11980.1.A1_atAt1g06160--4e-1At5g27090AGL54O.I.H.G.S.X.
0.3945.6Zm.19306.1.A1_atAt1g06160hypothetical protein LOC100193355-6e-1At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.3844.2Zm.11255.1.S1_atAt1g06160hypothetical protein LOC100217136-3e-32At5g40200DegP9 (DegP protease 9)O.I.H.G.S.X.
0.3844.2Zm.14995.1.A1_atAt1g06160--2e+0At1g62960ACS10 (ACC SYNTHASE 10)O.I.H.G.S.X.
0.3742.3Zm.13112.2.S1_a_atAt1g06160--2e-7At5g63420emb2746 (embryo defective 2746)O.I.H.G.S.X.
0.3538.9Zm.17990.1.S1_atAt1g06160hypothetical protein LOC100275286-2e+0At5g54460wound-responsive protein-relatedO.I.H.G.S.X.
0.3437.2Zm.13871.1.A1_atAt1g06160R2R3MYB-domain protein-2e-5At1g08810MYB60 (myb domain protein 60)O.I.H.G.S.X.
0.3336.0Zm.6569.2.S1_a_atAt1g06160hypothetical protein LOC100276303-1e+0At3g59900ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)O.I.H.G.S.X.
0.3336.0Zm.13427.1.S1_atAt1g06160hypothetical protein LOC100194389-1e-7At4g21520transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3029.8Zm.16306.1.A1_atAt1g06160hypothetical protein LOC100273693-2e+0At1g07140SIRANBPO.I.H.G.S.X.
0.2828.1Zm.10482.1.S1_atAt1g06160hypothetical protein LOC100280002-9e-1At1g04680pectate lyase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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