Co-expression analysis

Gene ID Os04g0257500
Gene name
Homology with ArabidopsisSimilar to At1g06160: ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) (HF=7e-3)
Module size 6 genes
NF 0.82
%ile 98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.98Os04g0257500AK107745.1-Ethylene-responsive element binding protein7e-3At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.
0.9198.90.99Os04g02325009632.m01461--1e+0At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.8395.80.98Os03g0162300AK110675.1-Hypothetical protein4e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.7189.60.98Os12g05117009640.m03180--1e-1At3g03030F-box family proteinO.I.H.G.S.X.
0.6787.20.98Os08g03031009636.m02060--5e-2At5g66230unknown proteinO.I.H.G.S.X.
0.6382.70.98Os01g0288100NM_183572.1--1e-1At1g07175unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
99.0100.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
16.998.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.498.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.998.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.098.6GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.698.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.298.5GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.598.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.208714.1.S1_at, orthologous to the query gene, Os04g0257500

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6991.5PtpAffx.208714.1.S1_atAt1g06160AP2/ERF domain-containing transcription factor-6e-9At3g23240ERF1 (ETHYLENE RESPONSE FACTOR 1)O.I.H.G.S.X.
0.6791.1PtpAffx.213748.1.S1_atAt1g06160hypothetical protein-8e-3At1g73000-O.I.H.G.S.X.
0.5984.9PtpAffx.223108.1.S1_atAt1g06160hypothetical protein-2e-1At1g66460protein kinase family proteinO.I.H.G.S.X.
0.5884.2PtpAffx.213392.1.S1_atAt1g06160hypothetical protein-3e-11At3g52400SYP122 (SYNTAXIN OF PLANTS 122)O.I.H.G.S.X.
0.5884.2PtpAffx.34391.1.S1_atAt1g06160hypothetical protein-3e-22At4g25970PSD3 (phosphatidylserine decarboxylase 3)O.I.H.G.S.X.
0.5279.4PtpAffx.209332.1.S1_atAt1g06160hypothetical protein-4e+0At4g33980unknown proteinO.I.H.G.S.X.
0.5078.6PtpAffx.94220.1.A1_atAt1g06160hypothetical protein-6e-13At2g42010PLDBETA1 (PHOSPHOLIPASE D BETA 1)O.I.H.G.S.X.
0.4774.6PtpAffx.151801.1.A1_atAt1g06160hypothetical protein-2e+0At5g35580ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.4774.6PtpAffx.201939.1.S1_s_atAt1g06160hypothetical protein-2e-1At5g14440-O.I.H.G.S.X.
0.4471.9PtpAffx.214127.1.S1_s_atAt1g06160hypothetical protein-3e+0At5g53270seed maturation family proteinO.I.H.G.S.X.
0.4369.7PtpAffx.204500.1.S1_atAt1g06160lysine/histidine transporter-2e-7At1g47670amino acid transporter family proteinO.I.H.G.S.X.
0.4268.6PtpAffx.209542.1.S1_x_atAt1g06160hypothetical protein-5e-1At2g32200unknown proteinO.I.H.G.S.X.
0.4268.6PtpAffx.14707.1.A1_atAt1g06160hypothetical protein-6e-7At3g53780rhomboid family proteinO.I.H.G.S.X.
0.3863.7PtpAffx.224981.1.S1_atAt1g06160hypothetical protein-6e-4At5g38250serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.3458.3PtpAffx.224383.1.S1_s_atAt1g06160hypothetical protein-1e-5At5g08350GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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