CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0243400

Gene name
Homology with Arabidopsis Similar to At5g26890: unknown protein (HF=4e+0)

Module size 9 genes

NF 0.48

%ile 62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.90 Os04g0243400 AK070633.1 - Conserved hypothetical protein 4e+0 At5g26890 unknown protein O.I. H.G. S.X.
0.61 81.2 0.91 Os05g0543800 AK102850.1 - Hypothetical protein 4e+0 Atmg00720 - O.I. H.G. S.X.
0.57 77.0 0.90 Os11g0689800 AK119600.1 - Conserved hypothetical protein 9e-1 At5g05420 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative O.I. H.G. S.X.
0.47 62.3 0.91 Os11g0579600 AK106009.1 - Conserved hypothetical protein 2e-1 At1g76070 unknown protein O.I. H.G. S.X.
0.44 58.1 0.89 Os10g0357700 AK106693.1 - Conserved hypothetical protein 9e-1 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) O.I. H.G. S.X.
0.43 55.4 0.92 Os12g0179700 AK120612.1 - Hypothetical protein 1e+0 At2g01464 - O.I. H.G. S.X.
0.39 48.3 0.92 Os01g0933400 AK070303.1 - Hypothetical protein 7e-1 At1g21600 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) O.I. H.G. S.X.
0.35 41.7 0.90 Os02g0145000 AK060106.1 - Hypothetical protein 3e-1 At2g23320 WRKY15 O.I. H.G. S.X.
0.31 34.5 0.91 Os04g0227100 AK120507.1 - - 6e-1 At3g47580 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.0 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.1 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.8 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage