CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0213400

Gene name
Homology with Arabidopsis Similar to At1g06930: unknown protein (HF=2e+0)

Module size 7 genes

NF 0.67

%ile 90.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.99 Os04g0213400 9636.m01647 - - 2e+0 At1g06930 unknown protein O.I. H.G. S.X.
0.77 93.1 0.99 Os04g0334540 9638.m01431 - - 8e+0 At5g50800 nodulin MtN3 family protein O.I. H.G. S.X.
0.71 89.6 0.99 Os01g0136000 9629.m00355 - 16.9 kDa class I heat shock protein 1e-5 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.67 87.2 0.99 Os11g0230100 9639.m01184 - - 2e-1 At4g05497 F-box family protein O.I. H.G. S.X.
0.57 77.0 0.99 Os02g0322600 9630.m02084 - - 4e-2 At4g35860 ATGB2 (GTP-BINDING 2) O.I. H.G. S.X.
0.53 71.3 0.99 Os05g0433100 9633.m03333 - Abscisic acid-activated protein kinase 3e-10 At1g10940 SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4) O.I. H.G. S.X.
0.50 68.0 0.99 Os09g0320000 9637.m01227 - - 2e-1 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
95.0 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
55.4 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.020 1 GO:0006278 The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.
0.020 1 GO:0006310 Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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