CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0196300

Gene name
Homology with Arabidopsis Similar to At5g01900: WRKY62 (HF=9e-2)

Module size 10 genes

NF 0.38

%ile 45.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.89 Os04g0196300 AK073111.1 - Hypothetical protein 9e-2 At5g01900 WRKY62 O.I. H.G. S.X.
0.53 71.3 0.91 Os03g0425100 AK070206.1 - Hypothetical protein 2e+0 At3g15790 MBD11 O.I. H.G. S.X.
0.53 71.3 0.92 Os12g0179700 AK120612.1 - Hypothetical protein 1e+0 At2g01464 - O.I. H.G. S.X.
0.40 51.1 0.91 Os11g0579600 AK106009.1 - Conserved hypothetical protein 2e-1 At1g76070 unknown protein O.I. H.G. S.X.
0.40 51.1 0.92 Os05g0543800 AK102850.1 - Hypothetical protein 4e+0 Atmg00720 - O.I. H.G. S.X.
0.39 48.3 0.91 Os01g0933400 AK070303.1 - Hypothetical protein 7e-1 At1g21600 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) O.I. H.G. S.X.
0.39 48.3 0.88 Os11g0689800 AK119600.1 - Conserved hypothetical protein 9e-1 At5g05420 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative O.I. H.G. S.X.
0.25 24.1 0.91 Os03g0744200 AK063816.1 - Hypothetical protein 1e-1 At2g41840 40S ribosomal protein S2 (RPS2C) O.I. H.G. S.X.
0.24 22.4 0.92 Os08g0535100 AK065449.1 - Conserved hypothetical protein 3e-1 At1g73000 - O.I. H.G. S.X.
0.23 21.2 0.91 Os01g0324400 AK102490.1 - Hypothetical protein 9e-1 At2g44304 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.8 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.8 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.2 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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