Co-expression analysis

Gene ID	Os04g0189012
Gene name
Homology with Arabidopsis	Similar to At5g13910: LEP (LEAFY PETIOLE) (HF=2e+0)
Module size	6 genes
NF	0.65
%ile	87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	76.3	0.85	Os04g0189012	9632.m00980	-	-	2e+0	At5g13910	LEP (LEAFY PETIOLE)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	0.86	Os03g0306700	AK109929.1	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	2e-1	At2g27250	CLV3 (CLAVATA3)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	0.86	Os06g0500700	9634.m02934	-	Cytochrome P450 family protein	1e-2	At3g26300	CYP71B34	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.84	Os01g0307500	AK108663.1	-	Cation transporter family protein	1e+0	At3g02670	proline-rich family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	0.86	Os11g0126800	AK059453.1	-	Hypothetical protein	9e-2	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	0.84	Os07g0643800	AK103858.1	-	Plant disease resistance response protein familyprotein	1e-1	At1g01730	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.3	99.4	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.5	98.9	GSM262008	IAC165, 11 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
16.8	98.8	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM262009	IAC165, 11 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
16.0	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2	98.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.8	98.6	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.3	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM159173	Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
11.9	98.3	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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