CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0183500

Gene name
Homology with Arabidopsis Similar to At2g10940: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=3e+0)

Module size 6 genes

NF 0.07

%ile 5.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.81 Os04g0183500 9632.m00919 - Amidase family protein 3e+0 At2g10940 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.11 6.5 0.85 Os04g0156200 9632.m00640 - Ribulose-phosphate binding barrel domaincontaining protein 7e-2 At1g64330 myosin heavy chain-related O.I. H.G. S.X.
0.09 4.9 0.87 Os08g0546900 AU197913 - NC domain containing protein 4e+0 At5g59490 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.07 3.7 0.85 Os12g0152100 AK070021.1 - Alpha/beta hydrolase fold domain containingprotein 6e-4 At3g48410 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.05 2.5 0.85 Os01g0636500 CR278327 - Glycoside hydrolase, family 28 protein 6e-4 At1g10640 polygalacturonase O.I. H.G. S.X.
0.04 2.0 0.84 Os02g0256100 AK059595.1 - Glycoside hydrolase, family 28 protein 1e-24 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.6 99.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.6 99.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.5 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.8 99.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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