Co-expression analysis

Gene ID Os04g0172400
Gene name
Homology with ArabidopsisSimilar to At2g38480: integral membrane protein, putative (HF=2e-1)
Module size 6 genes
NF 0.16
%ile 13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4660.90.61Os04g0172400AK064755.1-Transferase family protein2e-1At2g38480integral membrane protein, putativeO.I.H.G.S.X.
0.4458.10.84Os08g0372900AK102881.1-Annexin A7 (Annexin VII) (Synexin). Splice isoformShort3e+0At2g25250unknown proteinO.I.H.G.S.X.
0.3338.80.83Os03g0700200AK119711.1-Somatomedin B domain containing protein4e+0At1g20340DRT112O.I.H.G.S.X.
0.3032.70.77Os10g0116800AK110804.1-Purple acid phosphatase6e-4At2g01890PAP8 (PURPLE ACID PHOSPHATASE 8)O.I.H.G.S.X.
0.1712.60.73Os06g0548200AK105176.1-FAD linked oxidase, N-terminal domain containingprotein4e-3At1g26420FAD-binding domain-containing proteinO.I.H.G.S.X.
0.031.40.81Os06g0534800AK120650.1-Ankyrin repeat containing protein3e+0At5g23100unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.999.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
30.299.7GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
16.498.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.198.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.098.6GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.098.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.798.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.798.6GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.198.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0381GO:0006470The process of removing one or more phosphoric residues from a protein.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage