CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0171600

Gene name
Homology with Arabidopsis Similar to At1g79370: CYP79C1 (HF=2e-4)

Module size 7 genes

NF 0.05

%ile 3.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.56 Os04g0171600 AK100766.1 - Cytochrome P450 79A1 (EC 1.14.13.41) (TyrosineN-monooxygenase) (Cytochrome P450Tyr) 2e-4 At1g79370 CYP79C1 O.I. H.G. S.X.
0.60 79.7 0.60 Os12g0117700 AK107752.1 - Hypothetical protein 2e-1 At1g21560 unknown protein O.I. H.G. S.X.
0.47 62.3 0.60 Os07g0122000 AK102508.1 - Conserved hypothetical protein 1e+0 At2g06200 AtGRF6 (GROWTH-REGULATING FACTOR 6) O.I. H.G. S.X.
0.15 10.3 0.61 Os03g0115800 AU222487 - Conserved hypothetical protein 3e+0 At5g44420 PDF1.2 O.I. H.G. S.X.
0.15 10.3 0.67 Os09g0358400 9637.m01632 - - 2e-3 At3g53080 galactose-binding lectin family protein O.I. H.G. S.X.
0.03 1.4 0.60 Os02g0615500 AK100073.1 - Protein kinase domain containing protein 1e-1 At2g01918 calcium ion binding O.I. H.G. S.X.
0.01 0.5 0.59 Os02g0559800 AB045120.1 - Zn-finger, RING domain containing protein 6e-1 At4g24026 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
66.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.1 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.7 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.1 98.6 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
14.9 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
13.6 98.5 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
13.3 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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