CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0158000

Gene name
Homology with Arabidopsis Similar to At3g03800: SYP131 (SYNTAXIN OF PLANTS 131) (HF=4e+0)

Module size 8 genes

NF 0.56

%ile 76.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.99 Os04g0158000 9632.m00633 - - 4e+0 At3g03800 SYP131 (SYNTAXIN OF PLANTS 131) O.I. H.G. S.X.
0.67 87.2 0.99 Os07g0547100 NM_185720.1 - - 7e-1 At3g30768 unknown protein O.I. H.G. S.X.
0.63 82.7 0.99 Os02g0297100 9630.m01857 - - 3e-2 At2g28160 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) O.I. H.G. S.X.
0.56 76.3 0.99 Os08g0164732 9636.m00615 - - 4e-1 At4g19200 proline-rich family protein O.I. H.G. S.X.
0.55 73.7 0.99 Os06g0558501 9634.m03450 - - 2e+0 At1g53285 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0799200 9630.m05523 - - 1e-1 At5g22545 unknown protein O.I. H.G. S.X.
0.46 60.9 0.99 Os07g0585400 NM_187008.1 - - 8e+0 At5g42655 - O.I. H.G. S.X.
0.42 53.9 0.99 Os01g0786700 NM_190834.1 - Conserved hypothetical protein 1e+1 At5g47870 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.3 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
35.8 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage