CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0137100

Gene name
Homology with Arabidopsis Similar to At3g07010: pectate lyase family protein (HF=8e-6)

Module size 6 genes

NF 0.66

%ile 88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.88 Os04g0137100 AK060609.1 - Pectate lyase (Fragment) 8e-6 At3g07010 pectate lyase family protein O.I. H.G. S.X.
0.80 94.6 0.89 Os07g0564200 AK072771.1 - Conserved hypothetical protein 4e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.67 87.2 0.87 Os08g0505900 AK060670.1 - DNA-damage-repair/toleration protein DRT100precursor 1e-2 At5g12940 leucine-rich repeat family protein O.I. H.G. S.X.
0.61 81.2 0.88 Os01g0315700 AK112057.1 - Hypothetical protein 3e-12 At3g62860 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.46 60.9 0.88 Os11g0463700 AK065785.1 - Conserved hypothetical protein 4e-1 At5g14000 anac084 (Arabidopsis NAC domain containing protein 84) O.I. H.G. S.X.
0.44 58.1 0.89 Os09g0461500 AK102328.1 - Esterase/lipase/thioesterase domain containingprotein 2e-4 At5g23530 AtCXE18 (Arabidopsis thaliana carboxyesterase 18) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.2 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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