Co-expression analysis

Gene ID Os04g0118500
Gene name
Homology with ArabidopsisSimilar to At5g64160: unknown protein (HF=3e-1)
Module size 19 genes
NF 0.44
%ile 56.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6079.70.96Os04g01185009632.m00190-Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8)(Rotamase Pin1) (PPIase Pin1) (DlPar13)3e-1At5g64160unknown proteinO.I.H.G.S.X.
0.6987.90.98Os02g0111700AK058280.1-Ribosomal protein L37e family protein7e-3At1g1525060S ribosomal protein L37 (RPL37A)O.I.H.G.S.X.
0.5371.30.98Os03g0598800AK066806.1-60S ribosomal protein L155e-50At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.
0.5371.30.98Os03g0141000AK120267.1-60S ribosomal protein L215e-21At1g0969060S ribosomal protein L21 (RPL21C)O.I.H.G.S.X.
0.5068.00.98Os07g0622100AK069465.1-Ribosomal protein s6 RPS6-25e-69At4g31700RPS6 (RIBOSOMAL PROTEIN S6)O.I.H.G.S.X.
0.4964.40.98Os01g0896800CF330335-60S ribosomal protein L55e+0At5g25340unknown proteinO.I.H.G.S.X.
0.4762.30.97Os08g01172009636.m00140-40S ribosomal protein S133e-29At3g6077040S ribosomal protein S13 (RPS13A)O.I.H.G.S.X.
0.4762.30.97Os06g0153800AB026567.1-Beta 5 subunit of 20S proteasome3e-28At1g13060PBE1O.I.H.G.S.X.
0.4558.80.98Os06g0701400AK121229.1-60S acidic ribosomal protein P3 (P1/P2-like) (P3A)1e-1At3g28560-O.I.H.G.S.X.
0.4458.10.98Os07g0208000AK062943.1-40S ribosomal protein S15a7e-49At1g07770RPS15A (ribosomal protein s15a)O.I.H.G.S.X.
0.4253.90.97Os11g0151300AK121546.1-60S ribosomal protein L26A4e-1At3g4991060S ribosomal protein L26 (RPL26A)O.I.H.G.S.X.
0.4253.90.98Os01g0205500AK067763.1-60S ribosomal protein L11-2 (L16). Splice isoform21e-109At4g18730RPL16BO.I.H.G.S.X.
0.3846.90.98Os04g0598200BX897823-60S ribosomal protein L122e-21At3g5343060S ribosomal protein L12 (RPL12B)O.I.H.G.S.X.
0.3644.00.98Os02g0797200AK120800.1-60S ribosomal protein L396e-11At3g0219060S ribosomal protein L39 (RPL39B)O.I.H.G.S.X.
0.3541.70.98Os03g0807800AK064984.1-40S ribosomal protein S22e-16At3g5749040S ribosomal protein S2 (RPS2D)O.I.H.G.S.X.
0.3541.70.98Os11g0127900L36313.1-40S ribosomal protein S162e-9At3g0423040S ribosomal protein S16 (RPS16B)O.I.H.G.S.X.
0.3440.00.98Os03g0337800AK102721.1-60S ribosomal protein L19 (Fragment)2e-43At1g02780emb2386 (embryo defective 2386)O.I.H.G.S.X.
0.3338.80.98Os12g0508300AK059123.1-Conserved hypothetical protein2e-20At4g3386540S ribosomal protein S29 (RPS29C)O.I.H.G.S.X.
0.3236.30.97Os11g0615700AB026561.1-Proteasome subunit alpha type 5 (EC 3.4.25.1) (20Sproteasome alpha subunit E) (20S proteasome subunitalpha-5)1e-51At3g14290PAE2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.099.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
16.398.8GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.398.3GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.098.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.598.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0451GO:0006414The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.Link to AmiGO
0.0301GO:0006511The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage